Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1146

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1145: 9513 - K00669 AANAT arylalkylamine N-acetyltransferase, at 512734 to 513942 9513 mRNA_1146: 9514 - K06682 TEM1 Gtp-binding protein of the ras superfamily involved in termination of M-phase, at 514392 to 515549 9514 mRNA_1147: 9515 - KOG0069 Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily), at 515844 to 517256 9515

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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513,597 - 9513 mRNA_1145 0.71 1.2
513,690 - 9513 mRNA_1145 0.79 1.0
513,716 + 9513 mRNA_1145 0.81 -3.2
513,986 - 0.3
514,131 + 0.2
514,134 - -0.4
514,675 + 9514 mRNA_1146 0.24 -1.3
514,721 - 9514 mRNA_1146 0.28 0.2
514,858 - 9514 mRNA_1146 0.40 1.3
514,859 + 9514 mRNA_1146 0.40 -0.1
514,864 - 9514 mRNA_1146 0.41 0.7
514,874 - 9514 mRNA_1146 0.42 0.1
514,895 - 9514 mRNA_1146 0.43 -0.4
515,117 - 9514 mRNA_1146 0.63 -4.2
515,125 - 9514 mRNA_1146 0.63 1.5
515,281 - 9514 mRNA_1146 0.77 -0.0
515,724 + -0.5
515,876 + -0.5
515,992 - 9515 mRNA_1147 0.10 -0.1
516,438 + 9515 mRNA_1147 0.42 0.2
516,461 + 9515 mRNA_1147 0.44 0.0
516,461 - 9515 mRNA_1147 0.44 0.9
516,463 + 9515 mRNA_1147 0.44 0.9