Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1140

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1139: 9507 - KOG0948 Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily, at 499455 to 501152 9507 mRNA_1140: 9508 - Hypothetical Protein, at 501144 to 502364 9508 mRNA_1141: 9509 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 502606 to 503454 9509

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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500,526 + 9507 mRNA_1139 0.63 0.4
500,934 - 9507 mRNA_1139 0.87 1.9
501,104 + -0.5
501,115 + 1.4
501,514 + 9508 mRNA_1140 0.30 -1.2
501,645 + 9508 mRNA_1140 0.41 -3.1
501,657 - 9508 mRNA_1140 0.42 -0.9
501,665 + 9508 mRNA_1140 0.43 1.0
501,711 - 9508 mRNA_1140 0.46 0.1
501,725 + 9508 mRNA_1140 0.48 -0.4
501,819 + 9508 mRNA_1140 0.55 -2.4
501,830 - 9508 mRNA_1140 0.56 0.6
501,948 - 9508 mRNA_1140 0.66 0.4
501,979 - 9508 mRNA_1140 0.68 0.4
501,980 - 9508 mRNA_1140 0.68 0.5
502,126 + 9508 mRNA_1140 0.80 0.1
502,134 - 9508 mRNA_1140 0.81 1.5
502,139 + 9508 mRNA_1140 0.81 -0.6
502,238 - 9508 mRNA_1140 0.90 0.0
502,239 - 9508 mRNA_1140 0.90 0.5
502,243 - 0.4
502,398 + 0.4
502,400 - -1.7
502,407 + -4.6
502,420 - 0.2
502,424 + -2.6
502,424 + -0.7
502,425 - 0.4
502,431 + 0.0
502,435 - -0.4
502,440 + 0.6
502,446 + -0.5
502,726 - 9509 mRNA_1141 0.14 -0.0
503,043 + 9509 mRNA_1141 0.51 -2.2
503,286 - 9509 mRNA_1141 0.80 -0.1