Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1129

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1128: 9496 - Interpro Arrestin (or S-antigen), N-terminal domain 0, at 471353 to 475855 9496 mRNA_1129: 9497 - K12391 AP1G1 AP-1 complex subunit gamma-1, at 476023 to 479289 9497 mRNA_1130: 9498 - KOG1773 Stress responsive protein, at 479991 to 480650 9498

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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475,057 + 9496 mRNA_1128 0.82 0.7
475,127 - 9496 mRNA_1128 0.84 0.2
475,402 + 9496 mRNA_1128 0.90 -2.5
475,680 + -0.4
475,815 - 0.0
475,862 + -1.8
476,143 - 0.9
476,356 + 9497 mRNA_1129 0.10 0.7
476,754 - 9497 mRNA_1129 0.22 1.5
479,372 - 0.3
479,375 - 1.8
479,378 - -0.9
479,381 + 0.7
479,400 - 1.0
479,402 + 1.3
479,402 - -0.3
479,671 - -1.2
479,678 + -0.9
479,703 + 0.1
479,780 + -1.0
479,806 - -0.4
479,979 - 2.5
480,237 - 9498 mRNA_1130 0.37 -0.6