Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1127

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1126: 9494 - K15334 NCL1, TRM4 multisite-specific tRNA-(cytosine-C5)-methyltransferase, at 463118 to 466210 9494 mRNA_1127: 9495 - K00143 LYS2 L-aminoadipate-semialdehyde dehydrogenase, at 466494 to 471179 9495 mRNA_1128: 9496 - Interpro Arrestin (or S-antigen), N-terminal domain 0, at 471353 to 475855 9496

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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465,853 + 9494 mRNA_1126 0.88 0.0
466,275 - 1.1
466,276 + 0.1
466,280 + -1.5
466,284 + 0.1
466,285 + 0.4
466,286 - -0.4
466,286 + 1.1
466,286 - 0.9
466,359 + -0.6
466,359 - 0.6
466,362 + -1.4
466,362 - -0.6
466,362 + -2.0
466,368 - 0.1
466,370 - 0.4
466,371 - 0.2
466,373 + 0.8
466,374 - 0.8
466,387 + -0.4
466,392 + -1.0
466,412 + -0.4
466,422 - 0.7
466,819 - -1.3
466,933 + -1.3
466,951 - -2.9
466,965 + 9495 mRNA_1127 0.10 -3.3
467,936 - 9495 mRNA_1127 0.31 -0.1
470,341 - 9495 mRNA_1127 0.82 -1.2
470,633 - 9495 mRNA_1127 0.88 -2.9
470,676 + 9495 mRNA_1127 0.89 -1.6
470,689 + 9495 mRNA_1127 0.90 -1.6
470,770 - -4.2
470,934 + -2.8
471,228 - 0.7
471,231 + 1.8
471,233 - -0.5
471,234 - 2.0
471,240 - 0.3
471,253 + -0.7
471,384 - -0.1
471,409 - -0.4
471,421 + -0.2
471,535 + -1.1
471,569 - -2.0
471,588 + 2.1
471,588 + 0.5
471,599 + -0.2
471,601 - -1.0
471,731 - 0.1
471,844 - 9496 mRNA_1128 0.11 0.7
471,912 - 9496 mRNA_1128 0.12 -0.7