Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1126

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1125: 9493 - K20465 OSBPL9_10_11, ORP9_10_11 oxysterol-binding protein-related protein 9/10/11, at 460316 to 462771 9493 mRNA_1126: 9494 - K15334 NCL1, TRM4 multisite-specific tRNA-(cytosine-C5)-methyltransferase, at 463118 to 466210 9494 mRNA_1127: 9495 - K00143 LYS2 L-aminoadipate-semialdehyde dehydrogenase, at 466494 to 471179 9495

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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462,296 + 9493 mRNA_1125 0.81 -1.0
462,310 - 9493 mRNA_1125 0.81 1.1
462,313 + 9493 mRNA_1125 0.81 0.4
462,422 + 9493 mRNA_1125 0.86 -1.4
462,428 + 9493 mRNA_1125 0.86 0.2
462,444 + 9493 mRNA_1125 0.87 -0.2
462,574 + 0.6
462,741 + 0.6
462,902 + -1.4
462,906 + 0.5
463,049 - 0.4
463,138 + 0.1
463,281 - -1.5
463,290 + 0.9
463,343 - 0.6
463,723 + 9494 mRNA_1126 0.20 2.6
464,133 - 9494 mRNA_1126 0.33 1.1
464,252 - 9494 mRNA_1126 0.37 -1.3
465,236 - 9494 mRNA_1126 0.68 2.0
465,244 - 9494 mRNA_1126 0.69 1.1
465,853 + 9494 mRNA_1126 0.88 0.0
466,275 - 1.1
466,276 + 0.1
466,280 + -1.5
466,284 + 0.1
466,285 + 0.4
466,286 - -0.4
466,286 + 1.1
466,286 - 0.9
466,359 + -0.6
466,359 - 0.6
466,362 + -1.4
466,362 - -0.6
466,362 + -2.0
466,368 - 0.1
466,370 - 0.4
466,371 - 0.2
466,373 + 0.8
466,374 - 0.8
466,387 + -0.4
466,392 + -1.0
466,412 + -0.4
466,422 - 0.7
466,819 - -1.3
466,933 + -1.3
466,951 - -2.9
466,965 + 9495 mRNA_1127 0.10 -3.3