Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1111

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1110: 9478 - Hypothetical Protein, at 428517 to 429913 9478 mRNA_1111: 9479 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 430146 to 432940 9479 mRNA_1112: 9480 - Interpro Protein of unknown function (DUF3602) Protein of unknown function (DUF3602) 0, at 433263 to 434310 9480

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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429,176 + 9478 mRNA_1110 0.47 0.4
429,351 + 9478 mRNA_1110 0.60 -1.0
429,527 - 9478 mRNA_1110 0.72 -0.0
429,737 - 9478 mRNA_1110 0.87 1.0
429,758 - 9478 mRNA_1110 0.89 0.3
429,919 + -0.3
429,920 - -1.3
430,032 - 0.5
430,035 - 0.2
430,038 + -0.2
430,047 + 0.6
430,047 + 0.7
430,054 + 0.3
430,074 - 1.8
430,226 + 0.3
430,229 - -0.4
430,229 - -0.7
430,344 - -0.2
430,348 - -0.2
430,350 - 0.6
430,351 + -1.1
430,467 - 9479 mRNA_1111 0.11 1.1
430,485 - 9479 mRNA_1111 0.12 1.0
430,498 + 9479 mRNA_1111 0.13 -0.6
430,614 + 9479 mRNA_1111 0.17 -1.0
430,655 + 9479 mRNA_1111 0.18 -0.1
430,670 - 9479 mRNA_1111 0.19 1.5
430,730 + 9479 mRNA_1111 0.21 -1.4
430,812 + 9479 mRNA_1111 0.24 1.8
430,930 - 9479 mRNA_1111 0.28 -2.6
430,932 - 9479 mRNA_1111 0.28 0.4
431,643 - 9479 mRNA_1111 0.54 0.9
431,802 + 9479 mRNA_1111 0.59 2.1
431,954 - 9479 mRNA_1111 0.65 -0.0
432,231 + 9479 mRNA_1111 0.75 0.7
432,353 + 9479 mRNA_1111 0.79 -0.8
432,636 - 9479 mRNA_1111 0.89 1.6
432,689 - 0.3
432,794 + -1.7
432,813 + -1.6
432,948 + -2.1
433,092 - 0.2
433,096 - -0.3
433,252 - 1.0
433,267 + 0.5
433,267 - -0.4
433,381 - 9480 mRNA_1112 0.11 -0.6
433,388 - 9480 mRNA_1112 0.12 0.4
433,399 + 9480 mRNA_1112 0.13 0.1
433,401 + 9480 mRNA_1112 0.13 -0.7
433,406 + 9480 mRNA_1112 0.14 0.2
433,413 + 9480 mRNA_1112 0.14 -0.2
433,492 - 9480 mRNA_1112 0.22 1.7
433,537 + 9480 mRNA_1112 0.26 0.4
433,541 - 9480 mRNA_1112 0.27 0.3
433,687 + 9480 mRNA_1112 0.40 -0.4
433,688 - 9480 mRNA_1112 0.41 -0.6
433,697 + 9480 mRNA_1112 0.41 -0.7
433,705 - 9480 mRNA_1112 0.42 -0.8