Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1089

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1088: 9456 - KOG3179 Predicted glutamine synthetase, at 380129 to 381362 9456 mRNA_1089: 9457 - K01638 aceB, glcB malate synthase, at 381522 to 383960 9457 mRNA_1090: 9458 - K12393 AP1M AP-1 complex subunit mu, at 384249 to 386320 9458

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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380,629 - 9456 mRNA_1088 0.41 -0.0
381,055 - 9456 mRNA_1088 0.75 0.2
381,182 - 9456 mRNA_1088 0.85 0.9
381,231 + 9456 mRNA_1088 0.89 0.1
381,239 + 1.6
381,338 + -0.3
381,342 - 1.7
381,356 + 1.1
381,373 + -0.8
381,427 + -0.6
381,448 + -4.7
381,458 + -4.1
381,472 - -2.6
381,597 - -2.2
381,619 + -2.2
381,621 + -3.4
381,642 + -3.5
381,652 + -3.9
381,749 + -3.7
381,763 + -1.2
381,861 - 9457 mRNA_1089 0.14 -0.9
381,921 - 9457 mRNA_1089 0.16 -2.2
382,196 + 9457 mRNA_1089 0.28 -2.7
382,202 + 9457 mRNA_1089 0.28 -2.6
382,496 + 9457 mRNA_1089 0.40 -1.6
382,539 + 9457 mRNA_1089 0.42 -3.7
382,540 - 9457 mRNA_1089 0.42 -4.9
382,613 - 9457 mRNA_1089 0.45 -0.7
382,796 + 9457 mRNA_1089 0.52 -3.0
382,799 - 9457 mRNA_1089 0.52 -0.8
382,888 - 9457 mRNA_1089 0.56 -3.2
382,940 + 9457 mRNA_1089 0.58 -2.0
383,363 + 9457 mRNA_1089 0.75 -4.9
383,548 + 9457 mRNA_1089 0.83 -3.2
383,689 - 9457 mRNA_1089 0.89 -2.9
383,778 + -1.9
383,807 - -2.0
383,815 + -3.2
384,074 - 0.5