Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1073

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1072: 9440 - Hypothetical Protein, at 341677 to 343060 9440 mRNA_1073: 9441 - Hypothetical Protein, at 343845 to 345302 9441 mRNA_1074: 9442 - HMMPfam-Ankyrin repeats (3 copies)-PF12796,ProSiteProfiles-Ankyrin repeat profile.-PS50088,ProSiteProfiles-Ankyrin repeat region circular profile.-PS50297,SUPERFAMILY--SSF48403, at 346068 to 346985 9442

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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342,897 - 9440 mRNA_1072 0.88 0.5
342,924 - 1.7
342,941 - 0.4
343,054 - 0.8
343,085 - -0.4
343,097 - -0.3
343,117 + 0.4
343,120 - 0.1
343,145 + -1.3
343,226 - 0.6
343,243 - -3.4
343,244 - -3.9
343,245 - -0.3
343,253 + 1.6
343,261 - 0.9
343,264 + -0.8
343,273 + -0.1
343,291 - 0.2
343,300 + 1.1
343,326 - 0.5
343,345 - -3.2
343,346 + -0.4
343,375 - -0.3
343,424 - -0.3
343,424 + 0.6
343,451 + -2.0
343,566 + -0.2
343,584 - 1.6
343,693 + -0.9
344,009 + 9441 mRNA_1073 0.11 0.3
344,250 - 9441 mRNA_1073 0.28 -1.1
344,271 + 9441 mRNA_1073 0.29 0.4
344,542 - 9441 mRNA_1073 0.48 -0.1
344,723 - 9441 mRNA_1073 0.60 0.1
344,837 - 9441 mRNA_1073 0.68 1.0
344,951 + 9441 mRNA_1073 0.76 2.2
345,059 + 9441 mRNA_1073 0.83 -0.5
345,162 - 0.5
345,166 + -1.0
345,257 - -0.8
345,455 - 2.6
345,461 + -0.0
345,640 - -1.0
345,646 + 0.5
345,931 + -0.0
345,934 - 0.2
346,283 - 9442 mRNA_1074 0.23 -1.5