Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1067

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1066: 9434 - KOG1383 Glutamate decarboxylase/sphingosine phosphate lyase, at 320131 to 322252 9434 mRNA_1067: 9435 - K01580 E4.1.1.15, gadB, gadA, GAD glutamate decarboxylase, at 323098 to 325825 9435 mRNA_1068: 9436 - Hypothetical Protein, at 325989 to 327863 9436

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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322,177 + -0.2
322,239 - 0.4
322,253 + -2.6
322,531 + 1.4
322,591 - 0.1
322,695 - 0.1
322,837 + 0.4
322,961 + 1.4
323,113 + 0.5
323,852 + 9435 mRNA_1067 0.28 0.3
324,114 + 9435 mRNA_1067 0.37 -0.5
324,296 - 9435 mRNA_1067 0.44 -1.2
324,457 + 9435 mRNA_1067 0.50 -1.0
324,612 + 9435 mRNA_1067 0.55 1.2
325,306 + 9435 mRNA_1067 0.81 0.6
325,636 + 0.8
325,686 - -0.9
325,791 - 0.8
325,859 + 0.2
325,885 + 1.0
325,905 + -0.4
325,909 + 0.3
325,932 + 0.8
326,030 - -0.0
326,040 - 1.3
326,045 + -0.7
326,072 - 0.2
326,073 + -0.1
326,175 - -0.9
326,194 - 9436 mRNA_1068 0.11 -0.3
326,204 + 9436 mRNA_1068 0.11 -0.9
326,216 - 9436 mRNA_1068 0.12 -0.5
326,220 - 9436 mRNA_1068 0.12 -1.1
326,346 - 9436 mRNA_1068 0.19 1.3
326,490 - 9436 mRNA_1068 0.27 0.2