Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_949

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_948: 9316 - KOG2641 Predicted seven transmembrane receptor - rhodopsin family, at 41701 to 44858 9316 mRNA_949: 9317 - KOG1268 Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains, at 45301 to 46716 9317 mRNA_950: 9318 - Hypothetical Protein, at 46919 to 47823 9318

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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44,503 - 9316 mRNA_948 0.89 -0.5
44,900 + 0.8
45,025 + -0.9
45,026 - 1.1
45,037 + -0.2
45,044 + 1.5
45,056 + 0.3
45,188 + 0.5
45,342 + 0.4
45,465 + 9317 mRNA_949 0.12 1.3
45,482 - 9317 mRNA_949 0.13 -0.4
45,484 + 9317 mRNA_949 0.13 0.5
45,586 + 9317 mRNA_949 0.20 1.3
45,590 + 9317 mRNA_949 0.20 -0.0
45,590 - 9317 mRNA_949 0.20 0.8
45,596 - 9317 mRNA_949 0.21 -0.8
45,619 + 9317 mRNA_949 0.22 0.3
45,755 - 9317 mRNA_949 0.32 0.8
45,955 + 9317 mRNA_949 0.46 0.4
46,069 - 9317 mRNA_949 0.54 -1.2
46,175 - 9317 mRNA_949 0.62 -0.9
46,217 + 9317 mRNA_949 0.65 -0.8
46,799 - -1.1
46,985 - -0.5
47,127 + 9318 mRNA_950 0.23 -0.7
47,135 - 9318 mRNA_950 0.24 0.4
47,136 - 9318 mRNA_950 0.24 0.6
47,137 - 9318 mRNA_950 0.24 0.5
47,142 - 9318 mRNA_950 0.25 0.6
47,145 + 9318 mRNA_950 0.25 -1.7
47,147 - 9318 mRNA_950 0.25 -0.7
47,150 + 9318 mRNA_950 0.26 -1.0
47,150 + 9318 mRNA_950 0.26 0.7
47,159 + 9318 mRNA_950 0.27 -2.3
47,160 + 9318 mRNA_950 0.27 -1.4
47,165 + 9318 mRNA_950 0.27 0.2
47,166 + 9318 mRNA_950 0.27 1.1
47,166 + 9318 mRNA_950 0.27 -0.4
47,201 - 9318 mRNA_950 0.31 0.9
47,204 + 9318 mRNA_950 0.31 -0.2
47,206 + 9318 mRNA_950 0.32 -1.4
47,207 + 9318 mRNA_950 0.32 -0.1
47,207 - 9318 mRNA_950 0.32 1.0
47,210 + 9318 mRNA_950 0.32 0.3
47,212 - 9318 mRNA_950 0.32 -0.0
47,217 - 9318 mRNA_950 0.33 -0.3
47,223 + 9318 mRNA_950 0.34 -0.6
47,227 - 9318 mRNA_950 0.34 0.3
47,229 + 9318 mRNA_950 0.34 0.1
47,230 - 9318 mRNA_950 0.34 -0.4
47,250 + 9318 mRNA_950 0.37 0.9
47,329 + 9318 mRNA_950 0.45 0.5
47,340 + 9318 mRNA_950 0.47 -2.0
47,351 + 9318 mRNA_950 0.48 -0.2
47,353 + 9318 mRNA_950 0.48 -1.2
47,354 + 9318 mRNA_950 0.48 -0.2
47,393 + 9318 mRNA_950 0.52 0.4
47,395 + 9318 mRNA_950 0.53 -0.1
47,404 - 9318 mRNA_950 0.54 0.3
47,410 + 9318 mRNA_950 0.54 1.3
47,414 + 9318 mRNA_950 0.55 -0.5
47,420 + 9318 mRNA_950 0.55 -1.0
47,504 - 9318 mRNA_950 0.65 -1.3
47,521 + 9318 mRNA_950 0.67 -0.1
47,525 + 9318 mRNA_950 0.67 1.4
47,530 - 9318 mRNA_950 0.68 0.7
47,539 + 9318 mRNA_950 0.69 -1.0
47,549 - 9318 mRNA_950 0.70 -0.8
47,552 + 9318 mRNA_950 0.70 0.0
47,577 + 9318 mRNA_950 0.73 0.9
47,577 + 9318 mRNA_950 0.73 -0.7
47,622 + 9318 mRNA_950 0.78 0.2
47,705 - 9318 mRNA_950 0.87 1.6