Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_940

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_939: 9307 - Hypothetical Protein, at 23746 to 25185 9307 mRNA_940: 9308 - Hypothetical Protein, at 25419 to 26964 9308 mRNA_941: 9309 - HMMPfam-Calcineurin-like phosphoesterase-PF00149,SUPERFAMILY--SSF56300, at 27276 to 29421 9309

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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24,487 + 9307 mRNA_939 0.51 0.5
24,538 - 9307 mRNA_939 0.55 -1.7
24,633 + 9307 mRNA_939 0.62 -1.2
24,682 - 9307 mRNA_939 0.65 -0.2
24,763 + 9307 mRNA_939 0.71 0.4
24,807 + 9307 mRNA_939 0.74 1.3
24,928 + 9307 mRNA_939 0.82 -0.6
24,976 - 9307 mRNA_939 0.85 0.7
25,080 - 1.5
25,109 - 1.5
25,206 + -1.6
25,346 - -0.0
25,350 + -0.6
25,432 + 1.6
25,445 + -1.0
25,484 - -0.5
25,486 - 0.3
25,492 + -0.1
25,673 - 9308 mRNA_940 0.16 2.8
25,673 - 9308 mRNA_940 0.16 0.4
25,709 - 9308 mRNA_940 0.19 0.8
25,836 + 9308 mRNA_940 0.27 -1.7
25,839 - 9308 mRNA_940 0.27 -1.8
25,876 - 9308 mRNA_940 0.30 0.7
26,089 - 9308 mRNA_940 0.43 -0.2
26,104 + 9308 mRNA_940 0.44 0.5
26,116 + 9308 mRNA_940 0.45 0.4
26,188 - 9308 mRNA_940 0.50 -0.3
26,189 - 9308 mRNA_940 0.50 -0.1
26,195 + 9308 mRNA_940 0.50 -2.7
26,379 + 9308 mRNA_940 0.62 0.6
26,433 - 9308 mRNA_940 0.66 -0.0
26,439 - 9308 mRNA_940 0.66 -0.8
26,441 - 9308 mRNA_940 0.66 -1.0
26,457 - 9308 mRNA_940 0.67 -0.8
26,516 - 9308 mRNA_940 0.71 0.0
26,556 + 9308 mRNA_940 0.74 -1.7
26,560 + 9308 mRNA_940 0.74 0.7
26,561 - 9308 mRNA_940 0.74 0.6
26,566 + 9308 mRNA_940 0.74 -1.1
26,619 + 9308 mRNA_940 0.78 -0.9
26,629 + 9308 mRNA_940 0.78 0.4
26,672 - 9308 mRNA_940 0.81 1.0
26,727 + 9308 mRNA_940 0.85 0.0
26,727 - 9308 mRNA_940 0.85 0.0
26,727 - 9308 mRNA_940 0.85 -0.8
26,728 + 9308 mRNA_940 0.85 0.4
26,820 + 0.0
26,822 + 0.7
26,866 - -1.2
26,869 + -1.4
26,891 + 0.7
26,960 - 1.5
27,001 - -0.3
27,021 + 0.7
27,021 - 1.6
27,025 - 0.2
27,025 - 1.1
27,074 - 0.3
27,119 + 0.3
27,156 - 1.5
27,159 - 1.1
27,197 + 0.9
27,409 - 0.9
27,417 - -0.2
27,443 - 0.8
27,447 - 0.1
27,470 - 1.1
27,507 + 9309 mRNA_941 0.11 0.7
27,559 + 9309 mRNA_941 0.13 0.5
27,562 - 9309 mRNA_941 0.13 0.5