Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_901

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_900: 9268 - SUPERFAMILY--SSF52266, at 2146982 to 2149051 9268 mRNA_901: 9269 - SUPERFAMILY--SSF52266, at 2149228 to 2151284 9269 mRNA_902: 9270 - KOG2398 Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP), at 2151634 to 2155672 9270

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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2,148,254 - 9268 mRNA_900 0.61 0.3
2,148,524 - 9268 mRNA_900 0.74 -0.6
2,148,549 - 9268 mRNA_900 0.76 -0.3
2,148,673 + 9268 mRNA_900 0.82 0.2
2,148,676 - 9268 mRNA_900 0.82 0.9
2,148,687 - 9268 mRNA_900 0.82 -0.2
2,148,843 + 9268 mRNA_900 0.90 0.5
2,148,981 - 0.6
2,149,000 + -1.0
2,149,025 + -3.0
2,149,131 + 0.9
2,149,134 - 0.9
2,149,143 + -0.6
2,149,147 + 0.3
2,149,148 - 0.3
2,149,152 + 2.1
2,149,189 - 0.8
2,149,191 + 0.9
2,149,198 + -1.5
2,149,208 - -1.3
2,149,269 + -1.8
2,149,272 + 0.2
2,149,301 - -0.5
2,149,301 - -0.9
2,149,305 - 0.3
2,149,313 + -0.4
2,149,390 - -0.6
2,149,429 + -0.0
2,149,442 - 9269 mRNA_901 0.10 0.9
2,149,638 + 9269 mRNA_901 0.20 -0.2
2,149,715 - 9269 mRNA_901 0.24 0.4
2,149,894 + 9269 mRNA_901 0.32 -0.6
2,149,927 - 9269 mRNA_901 0.34 0.5
2,150,050 + 9269 mRNA_901 0.40 0.6
2,150,192 - 9269 mRNA_901 0.47 2.2
2,150,268 - 9269 mRNA_901 0.51 1.6
2,150,297 - 9269 mRNA_901 0.52 -1.1
2,150,315 + 9269 mRNA_901 0.53 0.9
2,150,315 + 9269 mRNA_901 0.53 1.2
2,150,315 - 9269 mRNA_901 0.53 0.7
2,150,325 + 9269 mRNA_901 0.53 1.0
2,150,339 + 9269 mRNA_901 0.54 0.6
2,150,349 + 9269 mRNA_901 0.54 1.6
2,150,349 - 9269 mRNA_901 0.54 -1.5
2,150,540 + 9269 mRNA_901 0.64 -0.1
2,150,894 + 9269 mRNA_901 0.81 -1.5
2,151,015 - 9269 mRNA_901 0.87 0.7
2,151,022 - 9269 mRNA_901 0.87 -0.4
2,151,040 - 9269 mRNA_901 0.88 0.4
2,151,079 - 0.4
2,151,331 - 0.5
2,151,345 + -1.0
2,151,356 - -0.7
2,151,374 - -0.1
2,151,404 - 0.3
2,151,415 + -0.3
2,151,445 - 2.4
2,151,525 + 0.2
2,151,620 - -0.3
2,151,627 + 0.2
2,151,799 - -0.0
2,151,811 + -0.0
2,151,812 + -0.6
2,151,857 + 2.0
2,151,978 - 2.0
2,152,007 - -0.0
2,152,081 + 9270 mRNA_902 0.11 -1.2