Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_846

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_845: 9213 - KOG3346 Phosphatidylethanolamine binding protein, at 2025421 to 2026759 9213 mRNA_846: 9214 - KOG2710 Rho GTPase-activating protein, at 2027534 to 2029466 9214 mRNA_847: 9215 - HMMPfam-Amino acid permease-PF13520, at 2029732 to 2032618 9215

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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2,026,556 - 9213 mRNA_845 0.85 2.2
2,026,686 - 0.5
2,026,688 - -0.7
2,026,852 - -0.9
2,026,863 + 0.3
2,026,865 - -0.3
2,027,000 - 0.6
2,027,161 + -1.4
2,027,169 + -0.8
2,027,321 + -0.5
2,028,600 - 9214 mRNA_846 0.55 -1.2
2,028,614 + 9214 mRNA_846 0.56 0.6
2,029,037 - 9214 mRNA_846 0.78 -0.4
2,029,178 + 9214 mRNA_846 0.85 1.3
2,029,241 - 9214 mRNA_846 0.88 0.9
2,029,319 - -0.9
2,029,323 - -0.1
2,029,468 - -0.8
2,029,610 + 0.0
2,029,610 - -0.7
2,029,637 - 0.1
2,029,638 - 1.1
2,029,644 - -2.5
2,029,728 + 1.2
2,029,920 + 0.2
2,029,955 + -0.3
2,029,966 - 0.1
2,030,160 + 9215 mRNA_847 0.15 0.5
2,030,224 - 9215 mRNA_847 0.17 -0.2
2,030,232 + 9215 mRNA_847 0.17 -1.2