Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_777

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_777: 9145 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 1845505 to 1850431 9145 mRNA_778: 9146 - K14548 UTP4, CIRH1A U3 small nucleolar RNA-associated protein 4, at 1850724 to 1853969 9146

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,844,669 - -1.1
1,844,678 - -1.4
1,844,690 + -0.5
1,844,691 - -1.2
1,844,691 - -0.4
1,844,702 + -0.5
1,844,703 + -0.3
1,844,994 - -0.2
1,845,124 + 1.0
1,845,255 - 0.5
1,846,142 - 9145 mRNA_777 0.13 -0.7
1,846,186 - 9145 mRNA_777 0.14 -0.1
1,846,203 - 9145 mRNA_777 0.14 0.5
1,846,237 - 9145 mRNA_777 0.15 -0.1
1,846,307 - 9145 mRNA_777 0.16 -0.3
1,846,603 - 9145 mRNA_777 0.22 0.3
1,847,136 + 9145 mRNA_777 0.33 -0.2
1,847,152 + 9145 mRNA_777 0.33 -1.1
1,847,331 + 9145 mRNA_777 0.37 -0.5
1,847,874 - 9145 mRNA_777 0.48 0.4
1,847,892 - 9145 mRNA_777 0.48 0.2
1,847,914 + 9145 mRNA_777 0.49 -0.5
1,847,930 - 9145 mRNA_777 0.49 0.2
1,848,091 - 9145 mRNA_777 0.52 1.7
1,848,105 - 9145 mRNA_777 0.53 0.6
1,848,771 - 9145 mRNA_777 0.66 1.8
1,848,783 + 9145 mRNA_777 0.67 1.5
1,848,814 - 9145 mRNA_777 0.67 0.5
1,849,260 + 9145 mRNA_777 0.76 -0.2
1,849,453 - 9145 mRNA_777 0.80 -1.9
1,849,632 + 9145 mRNA_777 0.84 1.9
1,849,686 + 9145 mRNA_777 0.85 1.0
1,849,731 + 9145 mRNA_777 0.86 1.1
1,849,758 - 9145 mRNA_777 0.86 0.4
1,849,768 + 9145 mRNA_777 0.87 0.9
1,849,791 + 9145 mRNA_777 0.87 2.3
1,849,902 + 9145 mRNA_777 0.89 -1.0
1,849,924 + 9145 mRNA_777 0.90 0.1
1,850,214 + 1.8
1,850,217 - -0.2
1,850,624 - -0.9