Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_756

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_755: 9123 - HMMPfam-Ribosomal protein L9, N-terminal domain-PF01281,SUPERFAMILY--SSF55658, at 1802135 to 1802908 9123 mRNA_756: 9124 - HMMPfam-Protein of unknown function (DUF3074)-PF11274,SUPERFAMILY--SSF55961, at 1802998 to 1803902 9124 mRNA_757: 9125 - K01493 comEB dCMP deaminase, at 1804262 to 1807266 9125

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,802,277 - 9123 mRNA_755 0.18 -0.4
1,802,279 + 9123 mRNA_755 0.19 0.9
1,802,545 - 9123 mRNA_755 0.53 0.3
1,802,721 + 9123 mRNA_755 0.76 -1.8
1,802,852 - 0.9
1,802,863 + -0.1
1,802,895 + 0.1
1,803,020 - -0.2
1,803,051 - 0.9
1,803,618 + 9124 mRNA_756 0.69 -1.0
1,803,638 + 9124 mRNA_756 0.71 2.1
1,803,727 + 9124 mRNA_756 0.81 1.0
1,803,756 + 9124 mRNA_756 0.84 0.8
1,803,880 + 0.5
1,803,914 + 1.4
1,803,927 + -0.1
1,803,928 + 1.6
1,803,944 + -0.2
1,804,037 - -0.3
1,804,210 - 0.2
1,804,362 - -2.7
1,804,495 - 1.4
1,804,694 + 9125 mRNA_757 0.14 0.0
1,804,742 + 9125 mRNA_757 0.16 0.3