Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_580

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_579: 8947 - K10686 UBE1C, UBA3 ubiquitin-activating enzyme E1 C, at 1386772 to 1388532 8947 mRNA_580: 8948 - Hypothetical Protein, at 1388734 to 1389540 8948 mRNA_581: 8949 - Interpro ERCC4 domain 0, at 1389971 to 1392481 8949

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,388,566 - -0.4
1,388,592 - -0.8
1,388,739 - 0.5
1,388,875 - 8948 mRNA_580 0.17 -0.5
1,388,996 + 8948 mRNA_580 0.32 1.2
1,389,002 - 8948 mRNA_580 0.33 0.2
1,389,004 - 8948 mRNA_580 0.33 0.9
1,389,010 + 8948 mRNA_580 0.34 0.1
1,389,011 + 8948 mRNA_580 0.34 0.4
1,389,316 + 8948 mRNA_580 0.72 0.1
1,389,319 + 8948 mRNA_580 0.72 0.0
1,389,384 - 8948 mRNA_580 0.81 0.9
1,389,429 + 8948 mRNA_580 0.86 1.3
1,389,453 - 8948 mRNA_580 0.89 1.7
1,389,461 - 1.0
1,389,571 - -0.9
1,389,600 + -0.0
1,389,753 - -0.2
1,390,013 + 1.3
1,390,041 + 0.7
1,390,045 - 0.4
1,390,183 - 0.5
1,390,184 + -0.5
1,390,329 - 8949 mRNA_581 0.14 -0.9