Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_504

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_503: 8871 - Hypothetical Protein, at 1195207 to 1198729 8871 mRNA_504: 8872 - Hypothetical Protein, at 1199527 to 1200402 8872 mRNA_505: 8873 - HMMPfam-ubiE/COQ5 methyltransferase family-PF01209,SUPERFAMILY--SSF53335, at 1200752 to 1201768 8873

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,198,658 - -1.6
1,198,809 + 0.1
1,198,820 - -0.3
1,198,824 + 1.2
1,198,824 - 0.0
1,198,831 + -2.1
1,198,836 - -0.6
1,198,839 + -1.6
1,198,839 + -1.6
1,198,842 + -0.2
1,198,853 + 0.6
1,198,869 - 0.5
1,198,884 - 1.5
1,198,981 + 1.6
1,198,981 + 0.6
1,198,982 - -0.0
1,198,985 + -0.5
1,198,987 - -0.0
1,198,989 - 0.2
1,198,990 + 0.8
1,198,995 + 1.0
1,198,995 - 0.4
1,198,997 + 1.3
1,199,001 - 0.0
1,199,003 + -1.4
1,199,010 + 0.2
1,199,012 - -1.5
1,199,014 + 0.8
1,199,033 - -0.2
1,199,033 - 0.6
1,199,039 - 0.1
1,199,054 + 1.9
1,199,076 + -0.6
1,199,076 + -0.4
1,199,095 - 0.4
1,199,115 - -0.1
1,199,121 - -0.2
1,199,123 + 0.6
1,199,131 + -0.5
1,199,137 + -1.4
1,199,214 - 0.3
1,199,256 - -0.9
1,199,284 - -1.2
1,199,289 - -1.8
1,199,317 + -1.0
1,199,334 - 0.6
1,199,334 - -0.4
1,199,349 - 0.2
1,199,372 - 0.4
1,199,372 - -0.3
1,199,381 - 0.2
1,199,385 + -0.8
1,199,387 - 0.4
1,199,388 + -1.1
1,199,389 - -0.5
1,199,390 - 0.5
1,199,397 + -1.8
1,199,403 - 0.9
1,199,405 + -0.3
1,199,420 - 0.1
1,199,425 + 0.8
1,199,429 - 1.2
1,199,516 - 0.2
1,199,557 - 0.8
1,199,565 + -0.1
1,199,589 + -0.0
1,199,598 - 0.7
1,199,614 + 0.0
1,199,707 - 8872 mRNA_504 0.21 0.9
1,199,745 + 8872 mRNA_504 0.25 -0.1
1,199,749 + 8872 mRNA_504 0.25 -1.7
1,199,833 - 8872 mRNA_504 0.35 0.4
1,199,868 + 8872 mRNA_504 0.39 -0.3
1,199,895 - 8872 mRNA_504 0.42 1.7
1,200,049 + 8872 mRNA_504 0.60 -1.0
1,200,161 + 8872 mRNA_504 0.72 0.3
1,200,166 - 8872 mRNA_504 0.73 0.2
1,200,215 - 8872 mRNA_504 0.79 0.0
1,200,330 + -0.1
1,200,630 + 0.6
1,200,777 - 1.9
1,200,781 - 0.6
1,200,905 + 8873 mRNA_505 0.15 1.1
1,201,078 + 8873 mRNA_505 0.32 2.2
1,201,200 + 8873 mRNA_505 0.44 -0.6
1,201,210 - 8873 mRNA_505 0.45 1.1
1,201,377 - 8873 mRNA_505 0.61 -0.4
1,201,383 + 8873 mRNA_505 0.62 -0.7