Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_485

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_484: 8852 - Hypothetical Protein, at 1151977 to 1154074 8852 mRNA_485: 8853 - K13278 ASPG 60kDa lysophospholipase, at 1154487 to 1156857 8853 mRNA_486: 8854 - HMMPfam-Domain of unknown function (DUF202)-PF02656, at 1157048 to 1157778 8854

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,153,513 - 8852 mRNA_484 0.73 -0.1
1,153,516 + 8852 mRNA_484 0.73 -0.4
1,153,541 + 8852 mRNA_484 0.75 0.9
1,153,645 - 8852 mRNA_484 0.80 0.4
1,153,653 + 8852 mRNA_484 0.80 0.1
1,153,653 - 8852 mRNA_484 0.80 -0.4
1,153,681 - 8852 mRNA_484 0.81 -0.3
1,153,684 + 8852 mRNA_484 0.81 1.7
1,153,687 - 8852 mRNA_484 0.82 0.5
1,153,693 + 8852 mRNA_484 0.82 -0.7
1,153,709 - 8852 mRNA_484 0.83 0.2
1,153,714 - 8852 mRNA_484 0.83 1.2
1,153,718 + 8852 mRNA_484 0.83 0.2
1,153,724 + 8852 mRNA_484 0.83 0.9
1,153,731 - 8852 mRNA_484 0.84 1.4
1,153,732 + 8852 mRNA_484 0.84 1.2
1,153,735 - 8852 mRNA_484 0.84 -0.5
1,153,738 + 8852 mRNA_484 0.84 1.8
1,153,748 - 8852 mRNA_484 0.84 -1.7
1,153,751 - 8852 mRNA_484 0.85 0.1
1,153,753 - 8852 mRNA_484 0.85 0.1
1,153,769 + 8852 mRNA_484 0.85 1.3
1,153,771 + 8852 mRNA_484 0.86 0.8
1,153,783 + 8852 mRNA_484 0.86 -0.6
1,153,795 - 8852 mRNA_484 0.87 -1.4
1,153,798 - 8852 mRNA_484 0.87 -0.4
1,153,804 + 8852 mRNA_484 0.87 0.3
1,153,814 + 8852 mRNA_484 0.88 -0.0
1,153,814 + 8852 mRNA_484 0.88 -1.7
1,153,877 - -0.4
1,153,884 + 3.3
1,153,902 + 2.1
1,153,902 + -1.4
1,153,920 - -0.7
1,153,943 + -2.2
1,153,949 + 0.4
1,153,962 + -1.0
1,153,964 + -0.4
1,153,965 + 0.1
1,153,979 - -1.5
1,154,003 - -0.0
1,154,027 + 1.1
1,154,034 + -0.0
1,154,089 - 0.8
1,154,099 - 1.4
1,154,128 + 0.8
1,154,136 + 0.1
1,154,269 - 0.9
1,154,270 - -0.9
1,154,411 + -0.1
1,154,414 - -1.0
1,154,429 - 1.0
1,154,430 + -0.2
1,154,472 - -1.1
1,154,505 - 1.8
1,154,511 + 1.0
1,154,521 + -1.6
1,154,532 - 2.3
1,154,551 + 2.1
1,154,561 - -0.6
1,154,612 + 0.9
1,154,615 + -0.2
1,154,622 + -2.5
1,154,623 + 0.9
1,154,628 + 0.9
1,154,809 - 8853 mRNA_485 0.14 0.7
1,154,863 - 8853 mRNA_485 0.16 -0.3
1,154,870 - 8853 mRNA_485 0.16 0.6
1,154,909 + 8853 mRNA_485 0.18 0.6
1,155,179 - 8853 mRNA_485 0.29 0.9
1,155,194 - 8853 mRNA_485 0.30 -0.2
1,155,312 - 8853 mRNA_485 0.35 -1.1
1,155,359 - 8853 mRNA_485 0.37 -0.4
1,155,470 - 8853 mRNA_485 0.41 0.7
1,155,612 - 8853 mRNA_485 0.47 0.8
1,155,762 - 8853 mRNA_485 0.54 0.1
1,156,040 + 8853 mRNA_485 0.65 -0.3
1,156,295 + 8853 mRNA_485 0.76 1.3
1,156,479 - 8853 mRNA_485 0.84 1.2
1,156,601 - 8853 mRNA_485 0.89 -0.7
1,156,904 - -0.7
1,156,930 - -1.3
1,156,965 + 0.3
1,157,108 - -1.8
1,157,250 - 8854 mRNA_486 0.28 -0.3
1,157,415 - 8854 mRNA_486 0.50 1.4
1,157,538 - 8854 mRNA_486 0.67 0.6
1,157,822 + 0.2
1,157,834 + -0.1