Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_483

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_483: 8851 - KOG1339 Aspartyl protease, at 1150104 to 1151338 8851 mRNA_484: 8852 - Hypothetical Protein, at 1151977 to 1154074 8852

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,149,132 + 0.2
1,149,223 + -0.6
1,149,224 - 0.5
1,149,242 + -0.7
1,149,246 - 0.7
1,149,251 - 1.1
1,149,254 + 1.5
1,149,320 - 0.9
1,149,328 + -1.4
1,149,338 - 0.1
1,149,339 - -0.9
1,149,342 - 1.3
1,149,348 + 2.5
1,149,356 - -0.5
1,149,366 + 0.8
1,149,371 + 0.7
1,149,378 + -1.4
1,149,411 + 0.1
1,149,421 - -1.3
1,149,438 + 2.4
1,149,456 - 0.1
1,149,460 - -1.2
1,149,469 + 0.6
1,149,477 - 0.4
1,149,526 + -0.2
1,149,575 - -0.1
1,149,645 + -0.4
1,149,671 - 0.4
1,149,733 - 1.1
1,149,756 + -0.1
1,149,781 - 0.1
1,149,826 - 1.3
1,149,852 - 0.0
1,149,886 + -0.4
1,149,932 + 0.6
1,149,977 + -0.0
1,149,995 - -0.2
1,150,019 + -0.3
1,150,103 - 0.5
1,150,261 + 8851 mRNA_483 0.13 -1.3
1,150,308 - 8851 mRNA_483 0.17 0.9
1,150,474 + 8851 mRNA_483 0.30 1.2
1,150,560 + 8851 mRNA_483 0.37 2.4
1,150,718 + 8851 mRNA_483 0.50 1.1
1,150,720 + 8851 mRNA_483 0.50 1.0
1,150,978 - 8851 mRNA_483 0.71 1.9
1,151,018 + 8851 mRNA_483 0.74 1.9
1,151,120 - 8851 mRNA_483 0.82 -0.8
1,151,171 + 8851 mRNA_483 0.86 0.8
1,151,301 - -1.3
1,151,308 + -2.8
1,151,338 + -0.0
1,151,422 + 1.0
1,151,428 - -0.7
1,151,450 - 0.9
1,151,450 + 0.8
1,151,452 + 0.2
1,151,453 + 1.0
1,151,460 - -1.9
1,151,472 + -0.5
1,151,484 + 0.5
1,151,492 + 2.3
1,151,506 - -0.1
1,151,506 - -1.3
1,151,524 - 1.6
1,151,526 + 1.0
1,151,546 - 3.2
1,151,546 - -1.9
1,151,599 + 0.3
1,151,634 - 0.2
1,151,775 + -0.3
1,152,216 + 8852 mRNA_484 0.11 -1.3
1,152,220 + 8852 mRNA_484 0.12 -1.3