Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_470

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_469: 8837 - KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain, at 1088366 to 1093699 8837 mRNA_470: 8838 - KOG0714 Molecular chaperone (DnaJ superfamily), at 1094157 to 1095851 8838 mRNA_471: 8839 - Hypothetical Protein, at 1096183 to 1097842 8839

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,093,329 + -1.7
1,093,369 - -1.0
1,093,637 - 0.9
1,093,704 + 0.1
1,093,745 + 1.5
1,093,764 - 0.6
1,093,919 - 0.2
1,093,923 - -0.1
1,093,923 + -0.5
1,093,924 - 0.8
1,093,932 + 0.8
1,093,940 - -0.8
1,094,079 + -0.2
1,094,091 - -0.1
1,094,095 + -0.2
1,094,219 - -0.4
1,094,236 + 2.1
1,094,238 - -0.3
1,094,243 - 0.1
1,094,253 + -0.4
1,094,398 - 8838 mRNA_470 0.14 -0.5
1,094,415 + 8838 mRNA_470 0.15 0.5
1,094,911 - 8838 mRNA_470 0.44 -0.2
1,094,921 + 8838 mRNA_470 0.45 -1.7
1,095,248 - 8838 mRNA_470 0.64 1.8
1,095,481 + 8838 mRNA_470 0.78 -0.4
1,095,486 - 8838 mRNA_470 0.78 -0.2
1,095,686 - -0.8
1,095,966 + -0.1
1,096,129 - 0.4
1,096,208 - 3.2
1,096,414 - 8839 mRNA_471 0.14 0.6
1,096,845 + 8839 mRNA_471 0.40 0.3