Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_424

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_423: 8791 - KOG4580 Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion, at 985910 to 986810 8791 mRNA_424: 8792 - HMMPfam-Diaphanous GTPase-binding Domain-PF06371,SUPERFAMILY--SSF48371, at 987368 to 990699 8792 mRNA_425: 8793 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 991145 to 992451 8793

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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986,551 - 8791 mRNA_423 0.71 0.4
986,663 - 8791 mRNA_423 0.84 -0.8
986,698 - 8791 mRNA_423 0.87 0.5
986,935 - -1.1
986,945 - -0.0
986,956 + 1.1
986,964 + -0.6
986,989 - 0.2
987,122 - -1.5
987,132 - 0.3
987,154 + 0.5
987,189 - 1.3
987,290 + 0.5
987,306 - -2.3
987,335 + -1.8
987,381 - 1.3
987,442 + -1.9
987,563 - -2.0
987,717 - 8792 mRNA_424 0.10 1.0
987,728 - 8792 mRNA_424 0.11 0.5
987,749 - 8792 mRNA_424 0.11 -0.8
988,307 + 8792 mRNA_424 0.28 -0.3
988,497 - 8792 mRNA_424 0.34 0.9
988,535 - 8792 mRNA_424 0.35 -1.7
988,633 + 8792 mRNA_424 0.38 0.9
988,935 - 8792 mRNA_424 0.47 2.4
989,211 + 8792 mRNA_424 0.55 -1.2
989,308 + 8792 mRNA_424 0.58 -1.1
989,375 - 8792 mRNA_424 0.60 -0.1
989,667 - 8792 mRNA_424 0.69 0.2
989,805 - 8792 mRNA_424 0.73 -0.9
990,071 + 8792 mRNA_424 0.81 0.6
990,163 + 8792 mRNA_424 0.84 0.3
990,201 + 8792 mRNA_424 0.85 0.1
990,342 - 8792 mRNA_424 0.89 -2.0
990,635 + -1.6
990,768 - 0.4
991,085 - -1.3
991,134 - 0.4
991,212 - 0.5
991,236 + 0.7
991,475 - 8793 mRNA_425 0.25 1.0
991,507 + 8793 mRNA_425 0.28 1.7