Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_419

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_418: 8786 - KOG2308 Phosphatidic acid-preferring phospholipase A1, contains DDHD domain, at 976232 to 979073 8786 mRNA_419: 8787 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 979163 to 981247 8787 mRNA_420: 8788 - K11209 yghU, yfcG GSH-dependent disulfide-bond oxidoreductase, at 981514 to 982786 8788

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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978,189 + 8786 mRNA_418 0.69 0.2
978,226 + 8786 mRNA_418 0.70 0.4
978,300 - 8786 mRNA_418 0.73 -1.0
978,782 - 8786 mRNA_418 0.90 -0.4
979,436 + 8787 mRNA_419 0.13 -2.8
979,436 + 8787 mRNA_419 0.13 0.2
979,674 + 8787 mRNA_419 0.25 -1.8
979,717 - 8787 mRNA_419 0.27 -0.3
979,853 + 8787 mRNA_419 0.33 1.5
980,002 + 8787 mRNA_419 0.40 -0.5
980,280 + 8787 mRNA_419 0.54 1.6
980,578 - 8787 mRNA_419 0.68 0.6
980,696 - 8787 mRNA_419 0.74 0.1
980,702 + 8787 mRNA_419 0.74 0.9
980,996 + 8787 mRNA_419 0.88 0.6
981,004 - 8787 mRNA_419 0.88 1.2
981,013 - 8787 mRNA_419 0.89 -1.3
981,135 + 0.4
981,140 + -2.1
981,141 - 1.2
981,147 + -0.3
981,156 - 0.8
981,158 + 0.5
981,306 + -0.0
981,306 + -1.9
981,440 + 1.0
981,589 + 0.1
981,631 - 0.1
981,875 + 8788 mRNA_420 0.28 0.3
981,882 - 8788 mRNA_420 0.29 0.7
981,984 - 8788 mRNA_420 0.37 0.3