Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_403

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_402: 8770 - BLAST N-terminal acetyltransferase catalytic subunit Nat1 [..., at 936053 to 937253 8770 mRNA_403: 8771 - Hypothetical Protein, at 937327 to 938664 8771 mRNA_404: 8772 - HMMPfam-PB1 domain-PF00564,HMMPfam-Zinc finger, ZZ type-PF00569,ProSitePatterns-Zinc finger ZZ-type signature.-PS01357,ProSiteProfiles-Zinc finger ZZ-type profile.-PS50135,SMART-Zinc-binding domain, present in Dystrophin, CREB-binding protein.-SM00291,SUPERFAMILY--SSF54277,SUPERFAMILY--SSF57850, at 939095 to 942093 8772

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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936,330 - 8770 mRNA_402 0.23 0.1
936,331 - 8770 mRNA_402 0.23 0.3
936,332 - 8770 mRNA_402 0.23 0.3
936,343 - 8770 mRNA_402 0.24 -0.9
936,349 - 8770 mRNA_402 0.25 -0.6
936,368 + 8770 mRNA_402 0.26 0.4
936,380 - 8770 mRNA_402 0.27 0.5
936,381 - 8770 mRNA_402 0.27 0.6
936,381 - 8770 mRNA_402 0.27 -2.9
936,384 + 8770 mRNA_402 0.28 1.7
936,385 + 8770 mRNA_402 0.28 -0.7
936,396 + 8770 mRNA_402 0.29 1.9
936,396 - 8770 mRNA_402 0.29 0.2
936,429 - 8770 mRNA_402 0.31 -0.8
936,477 - 8770 mRNA_402 0.35 0.0
936,512 + 8770 mRNA_402 0.38 -0.4
936,539 + 8770 mRNA_402 0.40 -1.0
936,542 + 8770 mRNA_402 0.41 0.0
936,545 + 8770 mRNA_402 0.41 1.1
936,550 + 8770 mRNA_402 0.41 1.1
936,567 - 8770 mRNA_402 0.43 1.5
936,578 + 8770 mRNA_402 0.44 -1.6
936,615 + 8770 mRNA_402 0.47 0.2
936,633 + 8770 mRNA_402 0.48 0.3
936,645 - 8770 mRNA_402 0.49 -2.3
936,649 - 8770 mRNA_402 0.50 0.4
936,652 - 8770 mRNA_402 0.50 0.5
936,664 + 8770 mRNA_402 0.51 0.6
936,664 + 8770 mRNA_402 0.51 0.8
936,669 + 8770 mRNA_402 0.51 -0.2
936,683 - 8770 mRNA_402 0.52 -0.2
936,683 - 8770 mRNA_402 0.52 0.4
936,703 - 8770 mRNA_402 0.54 2.2
936,712 - 8770 mRNA_402 0.55 -0.2
936,743 - 8770 mRNA_402 0.57 -0.0
936,750 - 8770 mRNA_402 0.58 2.0
936,750 - 8770 mRNA_402 0.58 0.9
936,772 + 8770 mRNA_402 0.60 -0.5
936,774 - 8770 mRNA_402 0.60 0.6
936,775 + 8770 mRNA_402 0.60 0.4
936,781 + 8770 mRNA_402 0.61 -0.2
936,790 + 8770 mRNA_402 0.61 1.5
936,791 - 8770 mRNA_402 0.61 -0.1
936,793 - 8770 mRNA_402 0.62 0.5
936,801 - 8770 mRNA_402 0.62 0.9
936,809 - 8770 mRNA_402 0.63 0.3
936,813 - 8770 mRNA_402 0.63 -0.0
936,817 - 8770 mRNA_402 0.64 -0.1
936,827 - 8770 mRNA_402 0.64 2.2
936,829 + 8770 mRNA_402 0.65 -0.7
936,830 - 8770 mRNA_402 0.65 1.8
936,832 - 8770 mRNA_402 0.65 0.7
936,837 + 8770 mRNA_402 0.65 0.4
936,887 - 8770 mRNA_402 0.69 0.7
937,262 - 0.4
937,277 - 1.2
937,279 - 0.3
937,281 - -0.3
937,285 - 0.1
937,289 + -0.6
937,292 - -1.3
937,306 + -1.6
937,310 + 0.6
937,311 - 0.3
937,385 - 0.6
937,394 - 3.3
937,400 + 0.2
937,405 - 0.4
937,406 + -0.0
937,409 + 1.1
937,409 + 0.4
937,411 + 0.9
937,411 + 0.1
937,412 + -0.7
937,414 - -0.2
937,417 - 1.0
937,419 + -1.7
937,422 - -0.9
937,424 + -0.5
937,429 - 0.3
937,433 + 0.6
937,434 - 0.4
937,537 - 8771 mRNA_403 0.16 -0.5
937,541 - 8771 mRNA_403 0.16 0.6
937,553 + 8771 mRNA_403 0.17 -0.9
937,562 + 8771 mRNA_403 0.18 -1.7
937,567 - 8771 mRNA_403 0.18 0.4
937,580 + 8771 mRNA_403 0.19 0.3
937,588 + 8771 mRNA_403 0.20 -1.3
937,607 - 8771 mRNA_403 0.21 -1.1
937,635 - 8771 mRNA_403 0.23 0.5
937,646 + 8771 mRNA_403 0.24 0.6
937,712 + 8771 mRNA_403 0.29 -0.8
937,712 + 8771 mRNA_403 0.29 -0.0
937,726 - 8771 mRNA_403 0.30 0.6
937,750 + 8771 mRNA_403 0.32 -0.4
937,751 + 8771 mRNA_403 0.32 -0.2
937,775 - 8771 mRNA_403 0.33 1.8
937,813 - 8771 mRNA_403 0.36 -1.1
937,830 + 8771 mRNA_403 0.38 1.2
937,871 - 8771 mRNA_403 0.41 -0.3
937,931 + 8771 mRNA_403 0.45 -2.3
938,092 + 8771 mRNA_403 0.57 -0.4
938,188 - 8771 mRNA_403 0.64 0.2
938,327 - 8771 mRNA_403 0.75 0.5
938,351 - 8771 mRNA_403 0.77 1.3
938,481 + 8771 mRNA_403 0.86 -0.8
938,532 - -0.2
938,545 + -0.9
938,621 + 0.7
938,654 + 0.4
939,082 - -1.0
939,087 + -0.0
939,114 + 1.4
939,190 + 0.3
939,393 + 2.1
939,592 - 8772 mRNA_404 0.17 0.5