Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_369

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_368: 8736 - KOG2100 Dipeptidyl aminopeptidase, at 853834 to 856786 8736 mRNA_369: 8737 - K20309 TRAPPC12 trafficking protein particle complex subunit 12, at 857232 to 859087 8737 mRNA_370: 8738 - HMMPfam-RTC4-like domain-PF14474, at 859391 to 862171 8738

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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856,522 - 2.2
856,539 + -2.5
856,548 - 0.4
856,554 + 1.2
856,668 - -0.2
856,695 - -2.7
856,775 + 0.8
856,798 - -1.2
856,823 + 0.5
856,823 + 0.6
856,827 + -1.7
856,854 + 0.1
856,954 + -0.4
856,954 + 0.1
856,972 - 0.7
856,977 + 2.0
856,988 + -0.2
856,992 + 0.9
856,992 - 0.1
857,010 - -0.4
857,017 - 0.5
857,029 + 0.1
857,053 - 0.3
857,055 - -0.6
857,072 + 1.1
857,075 - 1.1
857,115 - 0.1
857,131 + -1.0
857,165 + -1.2
857,165 + -0.8
857,170 - 0.4
857,367 + 1.7
857,391 + 1.3
857,683 + 8737 mRNA_369 0.24 -0.7
858,116 - 8737 mRNA_369 0.48 0.2
858,121 - 8737 mRNA_369 0.48 -0.1
858,298 + 8737 mRNA_369 0.57 -0.1
858,399 - 8737 mRNA_369 0.63 0.4
858,720 + 8737 mRNA_369 0.80 -1.1
859,014 - 0.0
859,174 - -0.4
859,178 + 0.4
859,181 + -0.1
859,183 + 1.0
859,186 + 2.3
859,285 + 0.4
859,329 - 0.0
859,343 + 0.7
859,448 - 0.4
859,599 + 0.1
859,878 - 8738 mRNA_370 0.18 -3.5
859,900 + 8738 mRNA_370 0.18 -1.0
859,954 - 8738 mRNA_370 0.20 1.6