Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_348

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_347: 8715 - K01358 clpP, CLPP ATP-dependent Clp protease, protease subunit, at 812263 to 813594 8715 mRNA_348: 8716 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 813811 to 815656 8716 mRNA_349: 8717 - K12825 SF3A1, SAP114 splicing factor 3A subunit 1, at 816569 to 819001 8717

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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812,917 - 8715 mRNA_347 0.49 1.8
812,959 - 8715 mRNA_347 0.52 0.6
812,966 + 8715 mRNA_347 0.53 0.3
813,126 + 8715 mRNA_347 0.65 0.1
813,181 + 8715 mRNA_347 0.69 -0.1
813,668 - 0.0
813,707 - 0.7
813,791 - -1.0
813,942 - 1.5
814,248 + 8716 mRNA_348 0.24 1.0
814,377 - 8716 mRNA_348 0.31 -0.3
814,392 - 8716 mRNA_348 0.31 2.5
814,521 + 8716 mRNA_348 0.38 1.3
814,542 - 8716 mRNA_348 0.40 1.3
814,801 - 8716 mRNA_348 0.54 1.0
814,853 + 8716 mRNA_348 0.56 -1.7
815,117 + 8716 mRNA_348 0.71 -0.7
815,203 + 8716 mRNA_348 0.75 0.7
815,273 + 8716 mRNA_348 0.79 0.4
815,283 + 8716 mRNA_348 0.80 -0.7
815,395 - 8716 mRNA_348 0.86 0.5
815,683 + 0.3
815,694 + 0.3
815,704 - -0.2
815,744 + 0.2
815,811 + -0.0
815,815 + 0.9
815,828 + 0.7
815,844 + 1.2
815,870 - -0.3
815,893 + -1.5
815,905 + -0.9
815,995 + -0.1
816,011 + 1.8
816,012 + 0.6
816,022 + -0.8
816,024 - 2.4
816,030 - 0.4
816,035 + -0.0
816,048 + 0.1
816,069 + -0.4
816,112 - -0.3
816,118 - 0.3
816,122 - 0.3
816,137 + 0.3
816,144 + 0.6
816,159 - -0.1
816,165 - 0.2
816,166 - 1.6
816,167 - 0.8
816,176 + 1.3
816,177 + 0.6
816,180 + -2.8
816,190 + 1.1
816,193 + 1.5
816,205 + 1.2
816,365 + 1.0
816,366 + 0.1
816,368 + 0.9
816,381 + -1.3