Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_341

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_340: 8708 - KOG1271 Methyltransferases, at 799973 to 801137 8708 mRNA_341: 8709 - K00860 cysC adenylylsulfate kinase, at 801326 to 802147 8709 mRNA_342: 8710 - SUPERFAMILY--SSF54285, at 802416 to 802761 8710 mRNA_343: 8711 - HMMPfam-Domain of unknown function (DUF4078)-PF13300, at 802821 to 804087 8711

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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800,329 - 8708 mRNA_340 0.31 1.1
800,348 + 8708 mRNA_340 0.32 0.5
800,571 + 8708 mRNA_340 0.51 -0.1
800,602 - 8708 mRNA_340 0.54 0.2
800,888 - 8708 mRNA_340 0.79 1.0
800,917 + 8708 mRNA_340 0.81 -0.4
801,030 - 0.5
801,032 - -1.4
801,036 + 2.3
801,175 - 0.3
801,180 - -0.6
801,182 + 0.2
801,186 - -0.3
801,202 + -1.0
801,323 + 1.3
801,356 + -3.0
801,379 + -0.6
801,467 - 8709 mRNA_341 0.17 -0.4
801,477 - 8709 mRNA_341 0.18 -2.8
801,478 + 8709 mRNA_341 0.18 -1.0
801,479 + 8709 mRNA_341 0.19 -2.3
801,483 - 8709 mRNA_341 0.19 -1.6
801,631 - 8709 mRNA_341 0.37 -3.6
801,679 - 8709 mRNA_341 0.43 -3.0
801,684 - 8709 mRNA_341 0.44 -0.5
801,788 - 8709 mRNA_341 0.56 -2.5
801,803 + 8709 mRNA_341 0.58 -4.0
801,820 - 8709 mRNA_341 0.60 -2.7
802,107 - -1.0
802,107 - 1.3
802,385 - -0.5
802,387 - 0.0
802,388 + 2.1
802,397 + 0.8
802,398 + -0.1
802,547 - 8710 mRNA_342 0.38 -0.6
802,553 - 8710 mRNA_342 0.40 -1.0
802,555 + 8710 mRNA_342 0.40 0.3
802,560 + 8710 mRNA_342 0.42 -0.4
802,700 - 8710 mRNA_342 0.82 -0.3
802,704 + 8710 mRNA_342 0.83 1.2
802,711 - 8710 mRNA_342 0.85 1.1
802,731 + 2.4
802,803 + 1.1
803,141 + 8711 mRNA_343 0.25 -1.5