Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_290

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_289: 8657 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 686748 to 688788 8657 mRNA_290: 8658 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSitePatterns-Sugar transport proteins signature 1.-PS00216,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 689147 to 690940 8658 mRNA_291: 8659 - K03012 RPB4, POLR2D DNA-directed RNA polymerase II subunit RPB4, at 691511 to 692003 8659

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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688,379 + 8657 mRNA_289 0.80 2.5
688,810 - -4.9
688,834 + 1.2
688,844 + 1.0
688,999 + -0.1
689,568 + 8658 mRNA_290 0.23 0.9
689,869 + 8658 mRNA_290 0.40 1.6
690,001 + 8658 mRNA_290 0.48 0.4
690,112 - 8658 mRNA_290 0.54 0.4
690,750 + 8658 mRNA_290 0.89 0.7
690,753 + 8658 mRNA_290 0.90 0.4
691,028 + -0.2
691,042 - -0.6
691,126 - 1.2
691,131 - -3.8
691,146 + -1.7
691,293 - 0.0
691,297 - -0.0
691,302 - -0.3
691,308 - 0.7
691,313 + 0.8
691,751 + 8659 mRNA_291 0.49 1.4