Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_250

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_249: 8617 - K03538 POP4, RPP29 ribonuclease P protein subunit POP4, at 605214 to 606480 8617 mRNA_250: 8618 - K19245 JLP1 sulfonate dioxygenase, at 607313 to 608781 8618 mRNA_251: 8619 - HMMPfam-ACT domain-PF13840,PIRSF--PIRSF008459,SUPERFAMILY--SSF55021, at 608918 to 609439 8619 mRNA_252: 8620 - Hypothetical Protein, at 609608 to 610870 8620

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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606,614 + 0.3
606,728 - -1.3
606,751 + -1.6
606,833 + 0.7
606,854 + -0.5
606,860 + -0.8
606,877 + 0.3
606,919 - -0.2
607,038 + 1.3
607,177 + 1.5
607,186 + -0.7
607,199 - -0.5
607,479 + 8618 mRNA_250 0.11 -0.9
607,503 + 8618 mRNA_250 0.13 0.6
607,605 - 8618 mRNA_250 0.20 -1.1
607,775 - 8618 mRNA_250 0.31 0.5
607,894 - 8618 mRNA_250 0.40 -1.6
607,906 - 8618 mRNA_250 0.40 0.1
607,914 - 8618 mRNA_250 0.41 -0.6
608,001 - 8618 mRNA_250 0.47 -1.0
608,030 - 8618 mRNA_250 0.49 0.2
608,059 + 8618 mRNA_250 0.51 1.1
608,200 - 8618 mRNA_250 0.60 0.3
608,209 + 8618 mRNA_250 0.61 0.2
608,331 - 8618 mRNA_250 0.69 -1.7
608,627 - 8618 mRNA_250 0.89 0.3
608,633 + 8618 mRNA_250 0.90 -0.1
608,925 + 0.7
609,181 - 8619 mRNA_251 0.50 0.7
609,190 + 8619 mRNA_251 0.52 -0.8
609,356 - 8619 mRNA_251 0.84 0.1
609,358 - 8619 mRNA_251 0.84 0.1
609,376 - 8619 mRNA_251 0.88 1.0
609,487 - -1.5
609,496 + -0.6
609,498 - -1.4
609,498 + 1.8
609,573 + -0.7
609,642 - 0.1
609,652 - 0.9
609,667 + 1.7
609,695 + 1.3