Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_246

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_245: 8613 - KOG0256 1-aminocyclopropane-1-carboxylate synthase, and related proteins, at 597112 to 598781 8613 mRNA_246: 8614 - Hypothetical Protein, at 598851 to 601414 8614 mRNA_247: 8615 - K11254 H4 histone H4, at 602212 to 602729 8615

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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598,124 + 8613 mRNA_245 0.61 -0.4
598,145 + 8613 mRNA_245 0.62 -0.6
598,299 + 8613 mRNA_245 0.71 0.4
598,386 - 8613 mRNA_245 0.76 -0.3
598,939 - 1.4
598,969 - 0.9
598,971 + -1.8
598,974 - -0.6
598,987 - 1.9
598,988 - -0.4
599,002 + -0.7
599,034 + 0.7
599,094 + -0.3
599,130 - 8614 mRNA_246 0.11 -0.0
599,148 + 8614 mRNA_246 0.12 0.4
599,153 - 8614 mRNA_246 0.12 -0.3
599,153 - 8614 mRNA_246 0.12 1.5
599,153 - 8614 mRNA_246 0.12 0.2
599,154 + 8614 mRNA_246 0.12 1.4
599,154 + 8614 mRNA_246 0.12 -0.9
599,166 + 8614 mRNA_246 0.12 0.5
599,167 - 8614 mRNA_246 0.12 0.8
599,167 - 8614 mRNA_246 0.12 -1.0
599,172 + 8614 mRNA_246 0.13 0.3
599,173 + 8614 mRNA_246 0.13 0.8
599,176 - 8614 mRNA_246 0.13 1.1
599,177 + 8614 mRNA_246 0.13 -0.1
599,177 + 8614 mRNA_246 0.13 -1.3
599,178 - 8614 mRNA_246 0.13 0.3
599,183 - 8614 mRNA_246 0.13 2.0
599,185 - 8614 mRNA_246 0.13 -1.2
599,187 + 8614 mRNA_246 0.13 -0.0
599,187 - 8614 mRNA_246 0.13 1.2
599,190 + 8614 mRNA_246 0.13 0.6
599,195 - 8614 mRNA_246 0.13 -0.2
599,201 + 8614 mRNA_246 0.14 -0.8
599,201 + 8614 mRNA_246 0.14 0.8
599,201 + 8614 mRNA_246 0.14 -0.8
599,201 + 8614 mRNA_246 0.14 1.0
599,201 + 8614 mRNA_246 0.14 -1.2
599,201 - 8614 mRNA_246 0.14 0.2
599,202 + 8614 mRNA_246 0.14 0.5
599,207 - 8614 mRNA_246 0.14 3.4
599,211 + 8614 mRNA_246 0.14 -0.3
599,213 + 8614 mRNA_246 0.14 -0.8
599,218 + 8614 mRNA_246 0.14 -2.2
599,223 + 8614 mRNA_246 0.15 -0.2
599,228 - 8614 mRNA_246 0.15 -0.3
599,254 + 8614 mRNA_246 0.16 -0.4
599,324 - 8614 mRNA_246 0.18 0.0
599,330 + 8614 mRNA_246 0.19 -1.5
599,333 + 8614 mRNA_246 0.19 0.3
599,551 + 8614 mRNA_246 0.27 0.1
599,554 - 8614 mRNA_246 0.27 -0.3
599,617 - 8614 mRNA_246 0.30 1.4
599,668 + 8614 mRNA_246 0.32 -0.7
599,731 + 8614 mRNA_246 0.34 -1.7
599,734 + 8614 mRNA_246 0.34 -0.8
599,744 + 8614 mRNA_246 0.35 0.9
599,747 - 8614 mRNA_246 0.35 1.9
599,904 + 8614 mRNA_246 0.41 0.3
600,211 + 8614 mRNA_246 0.53 1.6
600,781 + 8614 mRNA_246 0.75 0.0
601,092 + 8614 mRNA_246 0.87 -3.4
601,207 + 0.6
601,218 + 0.6
601,337 - -0.4
601,350 + -1.1
601,479 + -1.4
601,497 + 0.5
601,501 + 0.4
601,506 + 0.2
601,506 + -0.6
601,506 + 2.0
601,509 + 0.9
601,513 - -1.9
601,515 + 0.7
601,653 + 0.8
601,779 - 1.9
601,843 - 0.3
601,844 - 1.2
601,845 + -0.6
601,851 - 0.2
601,852 - 0.3
601,852 + 0.2
601,853 + 1.8
601,853 + -0.4
601,860 + -0.9
601,895 - -1.5
601,903 - 0.5
602,006 + 1.0
602,007 + 0.7
602,062 - 0.2
602,164 + 0.4
602,178 + 0.0