Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_229

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_228: 8596 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 563158 to 565625 8596 mRNA_229: 8597 - Hypothetical Protein, at 565794 to 566303 8597 mRNA_230: 8598 - K11254 H4 histone H4, at 566655 to 568496 8598

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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565,076 - 8596 mRNA_228 0.78 -0.6
565,098 + 8596 mRNA_228 0.79 -1.2
565,242 + 8596 mRNA_228 0.84 2.5
565,259 - 8596 mRNA_228 0.85 0.7
565,392 + 0.4
565,827 - -0.2
565,838 - 0.5
566,143 - 8597 mRNA_229 0.68 -0.6
566,150 - 8597 mRNA_229 0.70 -0.2
566,579 - -1.1
566,713 - -0.6
566,725 - -0.4
566,730 + 1.6
566,852 - 8598 mRNA_230 0.11 0.2
566,861 - 8598 mRNA_230 0.11 -0.3
566,868 - 8598 mRNA_230 0.12 -0.6
566,877 + 8598 mRNA_230 0.12 -2.0
566,879 + 8598 mRNA_230 0.12 0.5
566,880 - 8598 mRNA_230 0.12 -0.1
566,880 + 8598 mRNA_230 0.12 0.5
566,885 + 8598 mRNA_230 0.12 1.2
566,886 + 8598 mRNA_230 0.13 0.2
566,889 - 8598 mRNA_230 0.13 1.4
566,894 - 8598 mRNA_230 0.13 0.3
566,895 + 8598 mRNA_230 0.13 0.7
566,896 + 8598 mRNA_230 0.13 -1.1
566,912 + 8598 mRNA_230 0.14 0.2
566,947 - 8598 mRNA_230 0.16 0.7
566,998 - 8598 mRNA_230 0.19 0.7
567,051 + 8598 mRNA_230 0.21 -0.2
567,229 - 8598 mRNA_230 0.31 -0.3
567,257 - 8598 mRNA_230 0.33 0.0
567,285 - 8598 mRNA_230 0.34 0.3