Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_213

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_212: 8580 - K01194 TREH, treA, treF alpha,alpha-trehalase, at 521112 to 523919 8580 mRNA_213: 8581 - KOG1362 Choline transporter-like protein, at 524056 to 525912 8581

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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523,266 - 8580 mRNA_212 0.77 -1.4
523,296 - 8580 mRNA_212 0.78 -0.3
523,386 - 8580 mRNA_212 0.81 0.4
523,414 - 8580 mRNA_212 0.82 -0.9
523,425 - 8580 mRNA_212 0.82 -0.5
523,425 + 8580 mRNA_212 0.82 0.0
523,431 + 8580 mRNA_212 0.83 0.1
523,431 + 8580 mRNA_212 0.83 -0.3
523,469 + 8580 mRNA_212 0.84 0.7
523,484 + 8580 mRNA_212 0.84 0.5
523,527 + 8580 mRNA_212 0.86 1.1
523,531 - 8580 mRNA_212 0.86 -1.5
523,539 + 8580 mRNA_212 0.86 -0.0
523,551 - 8580 mRNA_212 0.87 3.2
523,554 + 8580 mRNA_212 0.87 2.4
523,562 + 8580 mRNA_212 0.87 -0.2
523,568 + 8580 mRNA_212 0.87 -0.3
523,658 - -0.1
523,659 + -0.2
523,673 + -0.8
523,683 + 0.6
523,707 - -1.5
523,713 + 1.2
523,885 + -0.0
523,887 - -0.2
523,962 - -1.8
523,972 + -0.5
523,973 - 0.3
523,986 - 0.3
524,008 - 1.5
524,024 - 0.7
524,358 + 8581 mRNA_213 0.16 -0.2
524,838 - 8581 mRNA_213 0.42 -1.4
524,848 + 8581 mRNA_213 0.43 0.7
524,986 - 8581 mRNA_213 0.50 0.0
525,470 - 8581 mRNA_213 0.76 -0.8
525,475 + 8581 mRNA_213 0.76 -0.3
525,795 + 2.1
526,207 + 0.1
526,371 + 0.4
526,497 - -0.3
526,781 - 1.7
526,786 + 1.2
526,787 + -0.3
526,820 + 0.3