Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_202

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_201: 8569 - K00294 E1.2.1.88 1-pyrroline-5-carboxylate dehydrogenase, at 492772 to 495021 8569 mRNA_202: 8570 - HMMPfam-Frequency clock protein-PF09421, at 495941 to 499437 8570 mRNA_203: 8571 - SUPERFAMILY--SSF51197, at 499764 to 500298 8571 mRNA_204: 8572 - Hypothetical Protein, at 500316 to 500871 8572

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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495,030 + 0.6
495,125 - -0.0
495,147 - 1.1
495,152 + 1.1
495,155 + -0.3
495,155 - 0.3
495,157 - 5.1
495,159 - -0.4
495,162 + 0.2
495,162 + 0.3
495,168 - -1.7
495,169 - 0.2
495,177 - -0.7
495,179 + 0.1
495,180 - -0.5
495,181 + 1.4
495,181 + -0.8
495,182 + 0.2
495,182 + -2.0
495,183 + 1.5
495,186 - -0.5
495,189 + -1.1
495,192 + -0.1
495,201 - 0.3
495,209 + 0.5
495,247 + 0.3
495,495 - 0.0
495,505 - 2.0
496,356 - 8570 mRNA_202 0.12 -0.1
496,374 + 8570 mRNA_202 0.12 0.9
496,508 - 8570 mRNA_202 0.16 -0.2
496,546 - 8570 mRNA_202 0.17 0.4
496,698 + 8570 mRNA_202 0.22 -0.2
497,018 - 8570 mRNA_202 0.31 -3.5
497,038 - 8570 mRNA_202 0.31 0.3
497,054 - 8570 mRNA_202 0.32 0.3
497,286 - 8570 mRNA_202 0.38 0.6
497,481 + 8570 mRNA_202 0.44 0.5
497,656 + 8570 mRNA_202 0.49 0.7
497,926 + 8570 mRNA_202 0.57 1.2
498,047 - 8570 mRNA_202 0.60 -2.2
498,779 + 8570 mRNA_202 0.81 1.7
498,916 - 8570 mRNA_202 0.85 2.4
498,939 + 8570 mRNA_202 0.86 0.2
499,071 - 8570 mRNA_202 0.90 0.9
499,072 + 8570 mRNA_202 0.90 0.9
499,074 + 8570 mRNA_202 0.90 3.1
499,082 - 8570 mRNA_202 0.90 0.5
499,085 + 8570 mRNA_202 0.90 0.4
499,186 + 1.5
499,198 + -0.3
499,215 - -0.2
499,221 - 1.7
499,224 - 0.7
499,236 + 0.6
499,238 - 0.6
499,240 + 0.8
499,360 - -0.3
499,369 - 0.8
499,379 + 0.4
499,380 + -0.3
499,382 - 2.3
499,385 + 0.2
499,386 + 2.0
499,500 - -0.0
499,503 + -0.5
499,506 - 0.3
499,516 - 0.5
499,517 - 1.2
499,520 + -0.9
499,523 - 0.7
499,526 + 0.6
499,536 + -1.2
499,538 + 0.8
499,666 - 1.4
499,669 - 1.2
499,813 - -1.1
499,857 + 8571 mRNA_203 0.17 0.3
499,958 + 8571 mRNA_203 0.36 -0.2
500,100 + 8571 mRNA_203 0.63 -0.1
500,110 + 8571 mRNA_203 0.65 1.4
500,274 - -0.2
500,401 - 8572 mRNA_204 0.15 0.0
500,425 - 8572 mRNA_204 0.20 0.5