Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_185

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_184: 8552 - KOG1286 Amino acid transporters, at 446665 to 448836 8552 mRNA_185: 8553 - K11874 UBP16 ubiquitin carboxyl-terminal hydrolase 16, at 449151 to 451288 8553 mRNA_186: 8554 - Hypothetical Protein, at 451676 to 453998 8554

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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448,592 - 8552 mRNA_184 0.89 0.1
448,617 - 8552 mRNA_184 0.90 0.5
448,843 - 0.6
449,036 - -0.2
449,038 - -0.3
449,042 + -0.9
449,043 + -0.3
449,044 - -1.4
449,051 - 0.8
449,082 + -2.7
449,090 + -1.6
449,091 - 2.3
449,105 + -0.4
449,113 + 0.5
449,139 + 0.6
449,269 - 1.0
449,296 - -1.5
449,298 + -1.4
449,557 - 8553 mRNA_185 0.19 -0.5
449,846 - 8553 mRNA_185 0.33 -0.7
450,281 - 8553 mRNA_185 0.53 -0.0
450,282 - 8553 mRNA_185 0.53 -0.2
450,434 - 8553 mRNA_185 0.60 -0.4
450,567 - 8553 mRNA_185 0.66 -0.3
450,612 + 8553 mRNA_185 0.68 -0.7
451,058 - 8553 mRNA_185 0.89 -0.1
451,324 - 1.0
451,326 + -0.2
451,338 + 0.0
451,784 - 0.5