Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_180

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_179: 8547 - KOG2886 Uncharacterized conserved protein, at 437893 to 438740 8547 mRNA_180: 8548 - K01647 CS, gltA citrate synthase, at 438943 to 441127 8548 mRNA_181: 8549 - K12870 ISY1 pre-mRNA-splicing factor ISY1, at 441723 to 442875 8549

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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437,946 - 0.1
437,994 - 8547 mRNA_179 0.12 -0.8
437,995 + 8547 mRNA_179 0.12 0.1
438,286 + 8547 mRNA_179 0.46 1.2
438,294 - 8547 mRNA_179 0.47 0.2
438,468 - 8547 mRNA_179 0.68 -0.7
438,697 + -0.0
438,710 - 0.8
438,711 + 1.5
438,717 - 0.5
438,727 - -0.3
438,734 + -2.0
438,736 - -1.7
438,741 - 0.1
438,751 - -0.2
438,766 - 1.8
438,768 - 0.5
438,862 - -0.6
438,864 - 2.3
438,866 - -0.7
438,890 - 0.3
438,998 + -2.0
439,019 - -0.6
439,019 - -1.6
439,024 - -1.7
439,030 - -0.7
439,048 - -1.6
439,050 + 0.3
439,186 - 8548 mRNA_180 0.11 1.1
439,206 + 8548 mRNA_180 0.12 2.0
439,230 + 8548 mRNA_180 0.13 -1.1
439,250 + 8548 mRNA_180 0.14 -0.3
439,332 + 8548 mRNA_180 0.18 -0.4
439,336 + 8548 mRNA_180 0.18 -1.1
439,503 + 8548 mRNA_180 0.26 0.4
439,598 + 8548 mRNA_180 0.30 1.0
439,642 - 8548 mRNA_180 0.32 2.9
439,652 - 8548 mRNA_180 0.32 -0.7
439,778 - 8548 mRNA_180 0.38 -1.2
439,779 + 8548 mRNA_180 0.38 -0.1
439,887 - 8548 mRNA_180 0.43 0.7
440,229 - 8548 mRNA_180 0.59 -1.8
440,682 - 8548 mRNA_180 0.80 -1.1
440,965 + -0.3
441,072 - 1.5
441,246 - 0.1
441,283 - -0.5
441,611 - 1.6