Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_176

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_175: 8543 - KOG2533 Permease of the major facilitator superfamily, at 429470 to 431854 8543 mRNA_176: 8544 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 432530 to 433945 8544 mRNA_177: 8545 - KOG4096 Uncharacterized conserved protein, at 434117 to 434779 8545

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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431,611 + 8543 mRNA_175 0.90 0.4
431,682 + 0.5
431,765 + -0.3
431,780 - -0.2
431,801 - 0.9
431,802 + 0.9
431,817 - 0.5
431,839 + -3.8
431,942 + 0.3
431,952 - 0.4
431,964 + 2.2
431,969 + 1.5
431,969 - 0.7
431,973 + -0.5
431,974 + 0.4
431,978 - 0.7
431,986 + 0.6
431,988 + 0.5
431,990 + 1.1
431,991 + -0.4
431,991 - 1.0
431,997 + -0.3
432,005 - 0.1
432,005 - 0.2
432,013 + -0.9
432,031 + 2.5
432,044 + 1.4
432,045 + -0.2
432,049 + 0.6
432,049 + -1.2
432,054 + 0.4
432,068 + -1.6
432,070 + -0.9
432,072 - -1.5
432,072 - -0.4
432,073 + -1.7
432,079 + 0.9
432,085 + 1.9
432,089 + 0.8
432,093 + -0.1
432,111 + 0.1
432,150 + -0.4
432,151 + 1.3
432,155 + 2.2
432,160 - 0.2
432,167 + -0.2
432,168 + -0.3
432,174 - 1.4
432,181 - -0.1
432,188 + 1.9
432,191 - 1.9
432,193 - 2.3
432,194 + -3.1
432,197 - 1.8
432,202 + 0.0
432,204 - -0.9
432,209 - 1.3
432,211 - -0.2
432,213 - 0.6
432,222 - 2.3
432,224 + 0.8
432,230 + 0.5
432,231 + 0.4
432,267 - 1.4
432,274 - 0.0
432,290 - 0.2
432,330 - -0.2
432,336 - -0.8
432,336 + 0.1
432,337 + 0.5
432,347 + 1.2
432,351 + 0.1
432,365 - 0.1
432,373 - 1.2
432,378 + 0.4
432,388 + 2.4
432,815 - 8544 mRNA_176 0.20 0.6
432,819 + 8544 mRNA_176 0.20 0.8
432,830 + 8544 mRNA_176 0.21 -1.9
432,839 - 8544 mRNA_176 0.22 -0.7
433,126 - 8544 mRNA_176 0.42 -1.6
434,612 + 8545 mRNA_177 0.75 0.4
434,620 + 8545 mRNA_177 0.76 -0.8
434,733 - 1.6
434,745 - -1.6
434,871 + 0.4
434,885 - -1.3
434,888 + -2.1