Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_142

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_141: 8509 - Hypothetical Protein, at 339978 to 342089 8509 mRNA_142: 8510 - HMMPfam-Protein of unknown function (DUF3712)-PF12505, at 343005 to 355699 8510 mRNA_143: 8511 - KOG4136 Predicted mitochondrial cholesterol transporter, at 356168 to 357922 8511

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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342,072 + 0.4
342,127 + -0.8
342,129 + -1.3
342,131 - 0.2
342,144 + 0.5
342,149 - -1.4
342,167 + 0.4
342,171 - 0.3
342,177 + 0.2
342,187 - 0.1
342,220 - 0.5
342,230 - 0.6
342,230 - 0.9
342,248 - -0.8
342,249 + -0.2
342,250 - -1.1
342,250 + 0.6
342,274 + 2.4
342,293 - 1.4
342,309 - 0.1
342,313 + -0.5
342,317 - 0.2
342,326 - 0.5
342,328 - -0.5
342,328 - -0.2
342,330 - -1.6
342,337 - 0.7
342,342 + -0.1
342,344 + 0.1
342,344 + -0.6
342,353 + -1.9
342,476 + -1.5
342,477 + 0.4
342,487 + 0.3
342,488 - 0.6
342,491 - 0.3
342,493 - 0.1
342,550 - -1.2
342,591 - -0.6
342,611 - 0.7
342,619 - -2.6
342,620 + 0.0
342,626 + -0.5
342,639 - -2.5
342,652 + -1.5
342,742 - -0.2
342,750 - -0.4
342,759 - -0.2
342,761 + -0.8
342,762 + -0.2
342,791 - -0.1
342,793 + 0.0
342,808 - 0.3
342,811 + -0.0
342,884 - 2.1
342,951 + -0.8
342,996 - 1.6
343,129 - 0.7
343,132 - 0.0
343,136 + -1.6
343,148 - 0.3
343,184 - 1.4
343,473 + 0.5
344,027 - 0.8
344,199 - 0.1
344,524 - 8510 mRNA_142 0.12 0.4
344,617 + 8510 mRNA_142 0.13 1.1
344,632 - 8510 mRNA_142 0.13 0.1
344,680 + 8510 mRNA_142 0.13 0.2
344,966 + 8510 mRNA_142 0.15 0.3
345,239 - 8510 mRNA_142 0.18 -1.2
345,394 + 8510 mRNA_142 0.19 -0.7
345,419 - 8510 mRNA_142 0.19 2.1
345,458 + 8510 mRNA_142 0.19 -0.4
345,527 - 8510 mRNA_142 0.20 0.0
345,687 + 8510 mRNA_142 0.21 0.9
345,741 - 8510 mRNA_142 0.22 -3.0
345,764 + 8510 mRNA_142 0.22 -0.6
345,784 + 8510 mRNA_142 0.22 0.6
346,252 - 8510 mRNA_142 0.26 -0.2
346,292 + 8510 mRNA_142 0.26 0.1
346,445 - 8510 mRNA_142 0.27 1.2
346,527 - 8510 mRNA_142 0.28 2.2
346,605 + 8510 mRNA_142 0.28 0.7
346,649 + 8510 mRNA_142 0.29 -1.0
346,705 - 8510 mRNA_142 0.29 0.0
346,746 + 8510 mRNA_142 0.29 0.7
347,055 - 8510 mRNA_142 0.32 -0.5
347,061 - 8510 mRNA_142 0.32 0.4
347,068 - 8510 mRNA_142 0.32 1.0
347,074 + 8510 mRNA_142 0.32 1.5
347,166 - 8510 mRNA_142 0.33 0.6
347,192 + 8510 mRNA_142 0.33 -1.5
347,193 + 8510 mRNA_142 0.33 -2.6
347,272 - 8510 mRNA_142 0.34 -0.4
347,592 - 8510 mRNA_142 0.36 -2.3
347,635 - 8510 mRNA_142 0.36 -0.8
347,645 + 8510 mRNA_142 0.37 0.2
347,661 - 8510 mRNA_142 0.37 0.6
347,669 + 8510 mRNA_142 0.37 -0.9
347,788 + 8510 mRNA_142 0.38 -0.5
348,162 + 8510 mRNA_142 0.41 -0.7
348,195 - 8510 mRNA_142 0.41 0.1
348,328 + 8510 mRNA_142 0.42 0.4
348,450 + 8510 mRNA_142 0.43 0.4
348,591 - 8510 mRNA_142 0.44 0.6
348,591 - 8510 mRNA_142 0.44 -0.1
348,724 - 8510 mRNA_142 0.45 -0.5
348,744 + 8510 mRNA_142 0.45 0.9
348,820 + 8510 mRNA_142 0.46 0.7
348,888 - 8510 mRNA_142 0.46 0.0
348,903 - 8510 mRNA_142 0.46 -0.5
348,954 - 8510 mRNA_142 0.47 1.4
349,039 - 8510 mRNA_142 0.48 1.0
349,057 + 8510 mRNA_142 0.48 0.7
349,099 + 8510 mRNA_142 0.48 0.2
349,383 - 8510 mRNA_142 0.50 1.0
349,439 - 8510 mRNA_142 0.51 -1.2
349,458 + 8510 mRNA_142 0.51 0.1
349,528 + 8510 mRNA_142 0.51 1.8
349,848 - 8510 mRNA_142 0.54 -0.9
349,878 - 8510 mRNA_142 0.54 -1.0
349,932 - 8510 mRNA_142 0.55 -1.7
349,936 - 8510 mRNA_142 0.55 1.9
350,006 - 8510 mRNA_142 0.55 -0.3
350,023 + 8510 mRNA_142 0.55 0.2
350,107 - 8510 mRNA_142 0.56 -2.6
350,148 - 8510 mRNA_142 0.56 0.8
350,205 - 8510 mRNA_142 0.57 0.2
350,239 - 8510 mRNA_142 0.57 -1.1
350,350 - 8510 mRNA_142 0.58 -0.1
350,384 + 8510 mRNA_142 0.58 0.2
350,414 - 8510 mRNA_142 0.58 0.7
350,501 - 8510 mRNA_142 0.59 -0.2
350,618 + 8510 mRNA_142 0.60 0.6
350,654 - 8510 mRNA_142 0.60 -0.5
350,656 + 8510 mRNA_142 0.60 0.1
350,731 + 8510 mRNA_142 0.61 -0.7
350,751 - 8510 mRNA_142 0.61 2.9
350,778 - 8510 mRNA_142 0.61 0.7
350,818 - 8510 mRNA_142 0.62 0.5
351,055 + 8510 mRNA_142 0.63 -1.0
351,081 - 8510 mRNA_142 0.64 0.4
351,224 - 8510 mRNA_142 0.65 -0.2
351,247 + 8510 mRNA_142 0.65 1.2
351,295 + 8510 mRNA_142 0.65 0.1
351,316 + 8510 mRNA_142 0.65 -2.9
351,346 - 8510 mRNA_142 0.66 -0.1
351,454 - 8510 mRNA_142 0.67 0.7
351,516 + 8510 mRNA_142 0.67 0.5
351,574 - 8510 mRNA_142 0.67 -0.4
351,584 - 8510 mRNA_142 0.68 -0.4
351,604 + 8510 mRNA_142 0.68 -0.3
351,640 - 8510 mRNA_142 0.68 -0.8
351,660 + 8510 mRNA_142 0.68 -0.2
351,725 + 8510 mRNA_142 0.69 1.9
351,755 - 8510 mRNA_142 0.69 -0.0
351,796 - 8510 mRNA_142 0.69 2.0
351,802 + 8510 mRNA_142 0.69 1.1
351,990 - 8510 mRNA_142 0.71 0.8
352,000 - 8510 mRNA_142 0.71 -0.4
352,021 - 8510 mRNA_142 0.71 -1.1
352,098 - 8510 mRNA_142 0.72 -0.4
352,103 + 8510 mRNA_142 0.72 0.4
352,106 + 8510 mRNA_142 0.72 0.7
352,120 + 8510 mRNA_142 0.72 0.5
352,153 - 8510 mRNA_142 0.72 1.0
352,299 - 8510 mRNA_142 0.73 1.8
352,306 + 8510 mRNA_142 0.73 -1.3
352,315 + 8510 mRNA_142 0.73 -1.0
352,557 - 8510 mRNA_142 0.75 -0.2
352,593 - 8510 mRNA_142 0.76 0.2
352,593 - 8510 mRNA_142 0.76 1.5
352,809 + 8510 mRNA_142 0.77 0.8
352,867 + 8510 mRNA_142 0.78 0.5
352,913 - 8510 mRNA_142 0.78 0.9
352,917 + 8510 mRNA_142 0.78 2.4
353,043 - 8510 mRNA_142 0.79 -1.0
353,115 - 8510 mRNA_142 0.80 1.5
353,198 + 8510 mRNA_142 0.80 0.1
353,310 - 8510 mRNA_142 0.81 0.4
353,375 + 8510 mRNA_142 0.82 -0.1
353,607 + 8510 mRNA_142 0.84 -1.1
353,613 - 8510 mRNA_142 0.84 -0.3
353,705 + 8510 mRNA_142 0.84 0.5
353,845 - 8510 mRNA_142 0.85 0.5
353,855 + 8510 mRNA_142 0.85 -0.4
353,893 - 8510 mRNA_142 0.86 -2.3
353,895 + 8510 mRNA_142 0.86 -0.1
353,899 + 8510 mRNA_142 0.86 1.4
353,949 - 8510 mRNA_142 0.86 -0.6
354,024 + 8510 mRNA_142 0.87 0.9
354,039 - 8510 mRNA_142 0.87 2.8
354,076 - 8510 mRNA_142 0.87 -0.4
354,146 + 8510 mRNA_142 0.88 0.5
354,172 + 8510 mRNA_142 0.88 -0.8
354,186 - 8510 mRNA_142 0.88 -0.4
354,222 - 8510 mRNA_142 0.88 0.7
354,230 + 8510 mRNA_142 0.88 0.7
354,482 + 0.0
354,653 - -2.2
354,729 - 0.9
355,099 - 1.2
355,161 - 0.4
355,374 - 0.6
355,403 - -0.8
355,418 - 0.0
355,442 - 0.2
355,531 + 0.4
355,647 + 0.8
355,755 - 1.2
355,785 + 0.2
355,804 + -1.1
356,035 + 3.1
356,179 - 0.4
356,187 - 0.8
356,537 - 8511 mRNA_143 0.21 0.4
356,609 - 8511 mRNA_143 0.25 0.2
356,663 + 8511 mRNA_143 0.28 0.8
356,682 + 8511 mRNA_143 0.29 -0.3