Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_141

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_140: 8508 - K14571 RIX7, NVL ribosome biogenesis ATPase, at 336645 to 339470 8508 mRNA_141: 8509 - Hypothetical Protein, at 339978 to 342089 8509 mRNA_142: 8510 - HMMPfam-Protein of unknown function (DUF3712)-PF12505, at 343005 to 355699 8510

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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339,578 - -0.5
339,595 - 0.2
339,597 + -0.7
339,606 - 0.5
339,614 - 0.9
339,617 + -0.3
339,617 + -0.2
339,729 + -0.8
339,744 + -0.7
339,767 - 0.4
339,779 - -0.2
339,782 + 0.0
339,786 - 0.7
339,789 - -0.6
339,798 - -0.6
339,798 - 1.8
339,802 - 1.3
339,803 + 0.7
339,804 - 0.2
339,811 + 1.3
339,837 + 0.1
339,837 + 0.4
339,837 - 1.2
339,841 + -1.9
339,844 + 0.1
339,844 + -0.9
339,846 - 0.6
339,851 - 1.2
339,851 + 0.5
339,852 - -0.3
339,861 + -0.1
339,864 + 1.1
339,865 - -1.7
339,885 - 1.6
339,892 + -0.1
339,897 - -0.9
339,900 + -0.6
339,907 + -1.5
339,911 + 0.6
339,913 + 1.0
339,925 - -1.5
340,037 + 0.2
340,081 - 0.0
340,224 - 8509 mRNA_141 0.12 -1.0
340,239 + 8509 mRNA_141 0.12 0.2
341,286 + 8509 mRNA_141 0.62 -1.4
341,520 - 8509 mRNA_141 0.73 -2.7
341,679 - 8509 mRNA_141 0.81 -0.2
341,809 - 8509 mRNA_141 0.87 0.3
341,977 - 1.0
342,072 + 0.4
342,127 + -0.8
342,129 + -1.3
342,131 - 0.2
342,144 + 0.5
342,149 - -1.4
342,167 + 0.4
342,171 - 0.3
342,177 + 0.2
342,187 - 0.1
342,220 - 0.5
342,230 - 0.6
342,230 - 0.9
342,248 - -0.8
342,249 + -0.2
342,250 - -1.1
342,250 + 0.6
342,274 + 2.4
342,293 - 1.4
342,309 - 0.1
342,313 + -0.5
342,317 - 0.2
342,326 - 0.5
342,328 - -0.5
342,328 - -0.2
342,330 - -1.6
342,337 - 0.7
342,342 + -0.1
342,344 + 0.1
342,344 + -0.6
342,353 + -1.9
342,476 + -1.5
342,477 + 0.4
342,487 + 0.3
342,488 - 0.6
342,491 - 0.3
342,493 - 0.1
342,550 - -1.2
342,591 - -0.6
342,611 - 0.7
342,619 - -2.6
342,620 + 0.0
342,626 + -0.5
342,639 - -2.5
342,652 + -1.5
342,742 - -0.2
342,750 - -0.4
342,759 - -0.2
342,761 + -0.8
342,762 + -0.2
342,791 - -0.1
342,793 + 0.0
342,808 - 0.3
342,811 + -0.0
342,884 - 2.1
342,951 + -0.8
342,996 - 1.6