Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_136

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_135: 8503 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 323114 to 325275 8503 mRNA_136: 8504 - HMMPfam-Aldose 1-epimerase-PF01263,SUPERFAMILY--SSF74650, at 326050 to 327675 8504 mRNA_137: 8505 - SUPERFAMILY--SSF53474, at 328204 to 331764 8505

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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325,115 - 0.2
325,115 - 0.3
325,291 - 0.7
325,293 + 0.1
325,300 + 1.0
325,301 - -1.2
325,302 + 0.1
325,312 - 1.0
325,317 + -1.2
325,452 - 1.4
325,594 + 0.0
325,595 - 0.9
325,604 - -0.4
325,921 + 0.5
326,033 + 1.7
326,324 + 8504 mRNA_136 0.17 0.5
326,384 - 8504 mRNA_136 0.21 -0.9
326,661 - 8504 mRNA_136 0.38 -1.5
326,837 + 8504 mRNA_136 0.48 0.7
326,915 + 8504 mRNA_136 0.53 0.4
326,937 + 8504 mRNA_136 0.55 0.1
326,970 - 8504 mRNA_136 0.57 0.2
326,997 + 8504 mRNA_136 0.58 -1.1
327,076 + 8504 mRNA_136 0.63 0.8
327,240 - 8504 mRNA_136 0.73 -0.8
327,253 + 8504 mRNA_136 0.74 0.0
327,259 + 8504 mRNA_136 0.74 -1.1
327,335 - 8504 mRNA_136 0.79 -1.7
327,359 - 8504 mRNA_136 0.81 0.9
327,504 + 8504 mRNA_136 0.89 1.6
327,565 - 0.8
327,648 + -0.7
327,652 - -0.4
327,662 - 0.6
327,663 + 1.0
327,667 + -1.3
327,669 - -0.6
327,686 + 0.9
327,819 - -0.8
327,980 + -0.3
328,075 - -2.7
328,101 - 0.6
328,107 - -0.9
328,112 + -0.2
328,261 - 0.1
328,275 + 1.8
328,280 + -0.1