Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_135

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_134: 8502 - Hypothetical Protein, at 322161 to 322511 8502 mRNA_135: 8503 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 323114 to 325275 8503 mRNA_136: 8504 - HMMPfam-Aldose 1-epimerase-PF01263,SUPERFAMILY--SSF74650, at 326050 to 327675 8504

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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322,119 + 0.9
322,256 - 8502 mRNA_134 0.27 -0.9
322,269 - 8502 mRNA_134 0.31 0.0
322,407 - 8502 mRNA_134 0.70 -0.6
322,433 - 8502 mRNA_134 0.77 2.0
322,543 - 0.5
322,554 + -0.1
322,629 - -0.9
322,668 + 0.6
322,683 - 0.5
322,943 + -2.1
322,969 - 0.5
322,971 - -1.4
323,247 - 0.5
324,278 - 8503 mRNA_135 0.54 0.1
324,307 + 8503 mRNA_135 0.55 0.8
324,482 - 8503 mRNA_135 0.63 0.5
324,532 - 8503 mRNA_135 0.66 1.5
324,567 - 8503 mRNA_135 0.67 1.3
324,588 + 8503 mRNA_135 0.68 1.3
324,612 + 8503 mRNA_135 0.69 1.5
324,728 - 8503 mRNA_135 0.75 0.8
324,731 - 8503 mRNA_135 0.75 0.0
325,032 + 8503 mRNA_135 0.89 0.6
325,115 - 0.2
325,115 - 0.3
325,291 - 0.7
325,293 + 0.1
325,300 + 1.0
325,301 - -1.2
325,302 + 0.1
325,312 - 1.0
325,317 + -1.2
325,452 - 1.4
325,594 + 0.0
325,595 - 0.9
325,604 - -0.4
325,921 + 0.5
326,033 + 1.7