Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_104

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_103: 8471 - Hypothetical Protein, at 248905 to 249863 8471 mRNA_104: 8472 - Hypothetical Protein, at 250227 to 251681 8472 mRNA_105: 8473 - K08504 BET1 blocked early in transport 1, at 251697 to 252245 8473 mRNA_106: 8474 - K15201 GTP3C3, TFC4 general transcription factor 3C polypeptide 3 (transcription factor C subunit 4), at 252623 to 256756 8474

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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249,257 - 8471 mRNA_103 0.37 0.7
249,294 + 8471 mRNA_103 0.41 -2.2
249,356 + 8471 mRNA_103 0.47 -0.8
249,626 - 8471 mRNA_103 0.75 -0.4
249,667 + 8471 mRNA_103 0.79 2.4
249,692 - 8471 mRNA_103 0.82 0.2
249,740 + 8471 mRNA_103 0.87 -0.2
249,768 + 0.2
249,881 - 1.0
249,884 - 1.5
249,912 - -0.9
249,996 - -0.4
250,000 + 0.6
250,001 + 0.2
250,069 - 1.0
250,081 - 1.6
250,090 - 0.9
250,107 + 0.9
250,210 - -0.2
250,230 + -2.8
250,366 - 0.2
250,384 + 8472 mRNA_104 0.11 -0.1
250,458 - 8472 mRNA_104 0.16 -1.0
250,484 + 8472 mRNA_104 0.18 -0.4
250,652 + 8472 mRNA_104 0.29 0.9
250,657 - 8472 mRNA_104 0.30 1.2
251,150 + 8472 mRNA_104 0.63 2.0
251,214 + 8472 mRNA_104 0.68 -1.1
251,362 + 8472 mRNA_104 0.78 -0.4
251,403 + 8472 mRNA_104 0.81 0.4
251,489 + 8472 mRNA_104 0.87 -0.2
251,552 + 0.4
252,568 - 2.2