Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_99

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_98: 8466 - Hypothetical Protein, at 233874 to 234659 8466 mRNA_99: 8467 - HMMPfam-Fungal cellulose binding domain-PF00734,HMMPfam-GlcNAc-PI de-N-acetylase-PF02585,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-Coagulation factors 5/8 type C domain (FA58C) profile.-PS50022,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF102588,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF57180, at 235594 to 240654 8467 mRNA_100: 8468 - K03686 dnaJ molecular chaperone DnaJ, at 241337 to 243142 8468

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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234,600 + 0.1
234,613 + 0.4
234,733 - 1.1
234,750 + -0.2
234,765 + 0.5
234,773 - 1.1
234,904 - 0.1
234,909 + -0.1
234,911 - 1.2
234,914 + 0.0
234,915 - -0.1
234,919 + -0.5
234,920 + 0.1
234,923 - 1.5
234,926 + 0.7
234,926 + 0.1
234,927 - 0.3
234,932 - 0.9
234,935 + 1.0
234,936 + -0.6
234,940 - 1.6
234,941 + -2.4
234,941 + -0.4
234,942 + 2.3
234,943 + -0.6
234,970 - 0.3
234,984 - 1.4
234,985 + 0.3
234,991 - 0.1
234,999 + 0.9
234,999 + -0.8
235,005 + -0.1
235,007 - 1.2
235,011 - -1.2
235,013 + -0.8
235,016 - 0.4
235,016 - 0.0
235,019 - 0.3
235,019 + -0.6
235,024 + -1.7
235,026 - 1.5
235,040 - 1.1
235,041 + 0.1
235,048 - -1.2
235,057 - 0.6
235,061 - -1.4
235,062 - -0.1
235,072 - 0.1
235,077 + 0.8
235,078 - -1.2
235,080 - 0.8
235,080 - 0.7
235,081 + 0.1
235,081 + 2.1
235,085 - 0.1
235,085 - 1.9
235,089 - -2.0
235,091 + -1.1
235,092 - 0.8
235,096 + -1.0
235,104 + 1.5
235,135 - 0.9
235,141 - -0.4
235,141 - -1.4
235,144 - -0.2
235,146 + 0.9
235,147 + 0.3
235,147 - 1.7
235,148 - 0.6
235,150 - -0.2
235,152 - 0.4
235,152 + -0.6
235,160 + -0.0
235,165 - 1.4
235,183 + 2.2
235,195 - 1.9
235,206 - -0.1
235,211 + -1.7
235,211 + -0.5
235,212 + 0.0
235,259 - 0.2
235,260 - -1.5
235,276 - 1.7
235,277 - 0.2
235,279 - -0.9
235,280 + 0.3
235,280 - -0.1
235,281 + 0.3
235,281 + -1.0
235,290 - -0.4
235,291 - 0.2
235,292 + 0.4
235,293 - -1.1
235,297 - -0.4
235,299 - -0.4
235,301 - 0.8
235,302 + 0.2
235,308 - 1.8
235,308 + 1.4
235,311 - 1.4
235,314 - -0.8
235,470 + -1.3
235,486 - 0.3
235,495 + 0.5
235,616 - 0.1
235,741 + 0.7
235,757 + 1.3
235,765 + -0.3
235,808 + 0.1
235,842 + -0.1
236,365 + 8467 mRNA_99 0.15 1.2
236,378 + 8467 mRNA_99 0.15 -1.2
236,494 - 8467 mRNA_99 0.18 0.1
236,669 - 8467 mRNA_99 0.21 -0.0
236,808 - 8467 mRNA_99 0.24 1.9
237,418 + 8467 mRNA_99 0.36 -1.8
237,609 + 8467 mRNA_99 0.40 0.5
237,943 + 8467 mRNA_99 0.46 -0.3
238,162 - 8467 mRNA_99 0.51 -0.7
238,262 + 8467 mRNA_99 0.53 -0.1
238,265 - 8467 mRNA_99 0.53 -0.0
238,316 - 8467 mRNA_99 0.54 -0.3
238,483 - 8467 mRNA_99 0.57 -0.0
238,496 + 8467 mRNA_99 0.57 0.7
238,615 + 8467 mRNA_99 0.60 -0.2
239,423 - 8467 mRNA_99 0.76 -1.3
239,463 + 8467 mRNA_99 0.76 -1.2
240,028 + 8467 mRNA_99 0.88 0.4
240,232 - -1.8
240,479 - -0.1
240,747 + 0.2