Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_88

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_87: 8455 - BLAST HAP1, N-terminal [Xanthophyllomyces dendrorhous], at 207025 to 210193 8455 mRNA_88: 8456 - K17361 ACOT9 acyl-coenzyme A thioesterase 9, at 210659 to 212272 8456

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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209,692 - 8455 mRNA_87 0.84 0.8
209,713 + 8455 mRNA_87 0.85 0.4
209,740 - 8455 mRNA_87 0.86 0.0
209,807 + 8455 mRNA_87 0.88 -0.3
209,891 + 1.4
210,158 - 0.8
210,162 + 0.4
210,167 - -0.7
210,173 - -0.3
210,176 + 0.1
210,179 - 0.1
210,179 - 0.2
210,307 + 1.0
210,320 - -0.1
210,321 - 1.8
210,337 + 0.6
210,345 + 0.7
210,368 - -0.9
210,399 - 0.2
210,407 - 0.5
210,418 + -0.3
210,431 + 0.9
210,439 - 0.9
210,449 - 0.1
210,453 - -0.1
210,460 - 0.2
210,476 - -0.2
210,487 + -0.3
210,546 - 0.7
210,568 + -2.6
210,579 + -1.6
210,593 - 2.6
210,600 + -1.6
210,603 - 1.5
210,604 + 1.4
210,610 - 2.1
210,628 + -0.0
210,630 + 0.3
210,637 + 1.1
210,639 - 0.1
210,639 + 0.9
210,645 + -1.8
210,654 - -0.0
210,662 + 0.1
210,663 + -0.9
210,672 + -1.5
210,684 - 0.1
210,772 + -0.1
210,794 + -0.8
210,797 - 0.3
211,078 + 8456 mRNA_88 0.26 0.3
211,503 + 8456 mRNA_88 0.52 0.9
211,523 + 8456 mRNA_88 0.54 -0.4
211,771 - 8456 mRNA_88 0.69 -0.4
211,778 + 8456 mRNA_88 0.69 -1.1
212,220 + -0.4
212,226 + 0.3
212,375 - -0.7
212,410 - -1.2
212,494 + 0.2
212,502 - 0.4
212,504 - 2.0
212,508 + -0.6
212,512 - -1.4
212,524 + -1.0
212,544 - 1.2
212,623 + 0.3
212,623 + -0.2
212,641 + -0.1
212,645 + -2.1
212,652 + -0.6
212,652 - 0.2
212,658 + -2.5
212,663 - 1.4
212,669 + 0.2
212,670 - 0.4
212,677 - 1.2
212,695 - 0.5
212,695 + 0.5
212,801 - -1.8
212,807 + 0.8
212,811 + -0.5
212,821 + 0.6
212,835 - 2.5
212,844 - -0.2
212,853 + -0.1
212,855 + 0.7
212,873 + -2.6
212,875 - -0.9
212,880 + -0.5
212,880 + 0.9
212,900 - -3.0
212,901 - 1.4
212,906 - -1.0
212,933 - 0.2
212,940 - -1.9
212,950 - 0.2
212,961 - 0.4
212,983 + 1.6
213,005 - 0.8
213,025 - -0.7
213,029 + -1.0
213,039 - -1.3
213,043 + 2.5
213,053 + 1.2
213,059 - 0.9
213,066 - 1.1
213,067 + 1.2
213,073 + 0.1
213,074 + -0.7
213,099 + 0.5
213,110 - -1.6
213,112 + -0.9
213,118 + 0.2
213,122 + -0.7
213,125 - 0.6
213,126 + 0.3
213,126 + 0.2
213,127 - 0.1
213,139 + 0.2
213,141 - 0.4
213,156 + 1.2
213,158 + -0.8
213,159 + -1.3
213,165 - -0.6
213,168 - -0.7
213,175 - 0.1