Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_47

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_46: 8414 - HMMPfam-Protein of unknown function (DUF3292)-PF11696, at 111074 to 114249 8414 mRNA_47: 8415 - HMMPfam-Serine hydrolase (FSH1)-PF03959,SUPERFAMILY--SSF53474, at 114589 to 115599 8415 mRNA_48: 8416 - HMMPfam-Serine hydrolase (FSH1)-PF03959,SUPERFAMILY--SSF53474, at 116348 to 117395 8416

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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113,624 + 8414 mRNA_46 0.80 -0.2
113,665 - 8414 mRNA_46 0.82 0.3
113,686 - 8414 mRNA_46 0.82 0.2
113,715 - 8414 mRNA_46 0.83 0.2
113,851 + 8414 mRNA_46 0.87 1.5
113,858 + 8414 mRNA_46 0.88 0.4
114,191 + 0.3
114,192 + -0.5
114,197 + -1.2
114,265 + 0.1
114,279 + -1.4
114,605 + 0.7
114,855 - 8415 mRNA_47 0.26 0.8
114,932 + 8415 mRNA_47 0.34 2.3
114,935 - 8415 mRNA_47 0.34 0.5
115,004 + 8415 mRNA_47 0.41 0.0
115,174 - 8415 mRNA_47 0.58 -0.3
115,308 + 8415 mRNA_47 0.71 0.9
115,372 - 8415 mRNA_47 0.77 0.1
115,609 - 0.4
115,729 + 0.7
115,808 - 0.2
115,835 + 1.5
115,866 - 0.4
115,920 - -0.7
115,921 + 0.1
115,922 - 2.2
115,931 + -0.2
115,945 + 1.5
115,954 - 0.5
115,969 + -1.0
115,972 + -1.4
115,980 - -0.1
115,988 + 1.3
115,994 + -0.4
115,995 - 0.1
115,998 + -1.5
116,003 + 1.0
116,030 + -0.5
116,037 - 0.6
116,040 + -1.7
116,047 - 0.1
116,052 + 0.4
116,081 + 0.8
116,081 + -1.0
116,154 - -0.6
116,154 + 1.6
116,186 + -0.6
116,192 - -0.1
116,198 + 0.8
116,199 + 0.9
116,231 - -0.6
116,235 + -0.8
116,242 + -2.6
116,270 + 0.4
116,376 - 0.1
116,402 - -1.9
116,467 - 8416 mRNA_48 0.11 1.3
116,564 - 8416 mRNA_48 0.21 1.2