Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_46

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_45: 8413 - SUPERFAMILY--SSF51445, at 108511 to 110701 8413 mRNA_46: 8414 - HMMPfam-Protein of unknown function (DUF3292)-PF11696, at 111074 to 114249 8414 mRNA_47: 8415 - HMMPfam-Serine hydrolase (FSH1)-PF03959,SUPERFAMILY--SSF53474, at 114589 to 115599 8415

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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110,418 - 8413 mRNA_45 0.87 1.0
110,441 - 8413 mRNA_45 0.88 -0.1
110,580 + -0.5
110,591 - 1.8
110,608 + -0.3
110,618 + -4.2
110,727 - 0.7
110,735 - 0.7
110,737 - -1.9
110,741 - -1.7
110,773 + -1.0
110,777 + 0.2
110,788 + 0.3
110,790 + 0.4
110,796 - 1.6
110,799 - 0.7
110,806 + -0.0
110,806 - -0.4
110,809 + -0.1
110,817 - 0.7
110,819 - 0.3
110,821 - -1.2
110,831 + 1.7
110,855 + 2.6
110,916 + 1.7
110,934 - -1.7
110,936 - -1.2
110,948 + -1.0
110,962 + -0.4
110,963 + -1.2
110,965 + -1.9
110,972 - -0.1
110,973 + -0.1
110,978 - 0.6
110,980 - 1.1
110,982 + -1.2
110,991 - 2.3
111,000 + 1.5
111,122 - 0.0
111,122 - 0.1
111,123 + 0.5
111,139 - 0.3
111,259 - -0.4
111,645 - 8414 mRNA_46 0.18 1.8
111,901 + 8414 mRNA_46 0.26 1.2
112,062 - 8414 mRNA_46 0.31 0.7
112,099 - 8414 mRNA_46 0.32 0.6
112,181 - 8414 mRNA_46 0.35 -1.2
112,191 + 8414 mRNA_46 0.35 0.6
112,332 + 8414 mRNA_46 0.40 0.2
112,499 + 8414 mRNA_46 0.45 0.2
112,504 - 8414 mRNA_46 0.45 0.0
112,513 - 8414 mRNA_46 0.45 3.4
112,520 - 8414 mRNA_46 0.46 0.5
112,560 - 8414 mRNA_46 0.47 -0.4
112,600 - 8414 mRNA_46 0.48 0.9
112,921 + 8414 mRNA_46 0.58 0.4
112,938 - 8414 mRNA_46 0.59 0.3
113,031 - 8414 mRNA_46 0.62 1.4
113,122 - 8414 mRNA_46 0.64 -0.5
113,215 - 8414 mRNA_46 0.67 -0.4
113,271 + 8414 mRNA_46 0.69 0.5
113,281 - 8414 mRNA_46 0.69 0.5
113,293 - 8414 mRNA_46 0.70 -1.0
113,368 + 8414 mRNA_46 0.72 -0.0
113,390 - 8414 mRNA_46 0.73 -0.3
113,392 - 8414 mRNA_46 0.73 0.5
113,474 + 8414 mRNA_46 0.76 -0.9
113,517 - 8414 mRNA_46 0.77 -1.0
113,580 - 8414 mRNA_46 0.79 1.7
113,624 + 8414 mRNA_46 0.80 -0.2
113,665 - 8414 mRNA_46 0.82 0.3
113,686 - 8414 mRNA_46 0.82 0.2
113,715 - 8414 mRNA_46 0.83 0.2
113,851 + 8414 mRNA_46 0.87 1.5
113,858 + 8414 mRNA_46 0.88 0.4
114,191 + 0.3
114,192 + -0.5
114,197 + -1.2
114,265 + 0.1
114,279 + -1.4
114,605 + 0.7
114,855 - 8415 mRNA_47 0.26 0.8
114,932 + 8415 mRNA_47 0.34 2.3
114,935 - 8415 mRNA_47 0.34 0.5
115,004 + 8415 mRNA_47 0.41 0.0
115,174 - 8415 mRNA_47 0.58 -0.3