Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_45

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_44: 8412 - Hypothetical Protein, at 106197 to 108340 8412 mRNA_45: 8413 - SUPERFAMILY--SSF51445, at 108511 to 110701 8413 mRNA_46: 8414 - HMMPfam-Protein of unknown function (DUF3292)-PF11696, at 111074 to 114249 8414

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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107,709 + 8412 mRNA_44 0.71 1.6
107,857 - 8412 mRNA_44 0.77 -0.2
108,138 - 0.6
108,418 - 1.4
108,987 - 8413 mRNA_45 0.22 0.1
109,483 - 8413 mRNA_45 0.44 -0.7
109,754 + 8413 mRNA_45 0.57 -0.4
109,802 - 8413 mRNA_45 0.59 -0.6
109,879 + 8413 mRNA_45 0.62 0.4
109,885 + 8413 mRNA_45 0.63 0.4
109,894 + 8413 mRNA_45 0.63 -0.1
110,418 - 8413 mRNA_45 0.87 1.0
110,441 - 8413 mRNA_45 0.88 -0.1
110,580 + -0.5
110,591 - 1.8
110,608 + -0.3
110,618 + -4.2
110,727 - 0.7
110,735 - 0.7
110,737 - -1.9
110,741 - -1.7
110,773 + -1.0
110,777 + 0.2
110,788 + 0.3
110,790 + 0.4
110,796 - 1.6
110,799 - 0.7
110,806 + -0.0
110,806 - -0.4
110,809 + -0.1
110,817 - 0.7
110,819 - 0.3
110,821 - -1.2
110,831 + 1.7
110,855 + 2.6
110,916 + 1.7
110,934 - -1.7
110,936 - -1.2
110,948 + -1.0
110,962 + -0.4
110,963 + -1.2
110,965 + -1.9
110,972 - -0.1
110,973 + -0.1
110,978 - 0.6
110,980 - 1.1
110,982 + -1.2
110,991 - 2.3
111,000 + 1.5
111,122 - 0.0
111,122 - 0.1
111,123 + 0.5
111,139 - 0.3
111,259 - -0.4
111,645 - 8414 mRNA_46 0.18 1.8