Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_37

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_36: 8404 - K00694 bcsA cellulose synthase (UDP-forming), at 86184 to 90147 8404 mRNA_37: 8405 - HMMPfam-Variant SH3 domain-PF14604,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 90908 to 93083 8405 mRNA_38: 8406 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097, at 93493 to 94436 8406

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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90,062 + -1.5
90,107 - 0.4
90,219 - -0.3
90,236 - 0.0
90,348 + -0.2
90,354 - 0.3
90,359 + -0.4
90,360 + 0.5
90,362 + 1.4
90,372 - 0.3
90,378 - -0.7
90,378 - 0.1
90,390 + 0.3
90,391 + 0.5
90,392 + -0.1
90,393 + 1.4
90,393 - 1.5
90,394 + 0.2
90,395 + 0.4
90,395 + 0.1
90,399 - -0.2
90,401 - 1.5
90,401 + 0.7
90,403 - 0.1
90,403 - 0.2
90,408 + 0.4
90,408 - 1.3
90,409 + -0.0
90,409 - 0.6
90,411 + -0.3
90,411 + -1.2
90,413 + 0.4
90,420 - 0.6
90,422 - 1.9
90,423 + -0.7
90,424 + 0.7
90,425 + 0.8
90,425 + 1.5
90,428 - 0.6
90,437 - -0.7
90,439 - -1.5
90,439 - -0.4
90,439 - 1.3
90,440 - -0.3
90,441 - 0.6
90,442 + -0.5
90,443 - -0.2
90,453 + 0.0
90,454 - 0.3
90,455 - 0.2
90,462 + 1.6
90,471 + 0.0
90,472 - 0.2
90,480 - -0.6
90,496 - 0.1
90,498 - 1.0
90,499 + -0.5
90,501 - -1.0
90,502 + 1.3
90,503 - -0.6
90,503 - -0.3
90,516 - 1.5
90,517 + 0.0
90,517 + 0.0
90,528 + -0.6
90,547 + 1.7
90,556 + 0.2
90,565 - 0.5
90,567 - 1.0
90,574 - 1.3
90,575 + 1.3
90,579 - -1.1
90,587 + 1.3
90,589 - 0.0
90,590 + 0.6
90,591 + 2.3
90,594 - -0.4
90,603 + -0.0
90,620 - -0.5
90,621 - -2.4
90,625 - -0.2
90,629 - -0.2
90,630 + 0.5
90,630 + -1.0
90,630 - -0.1
90,633 - 1.2
90,633 + -0.2
90,636 - 2.0
90,639 - 1.8
90,641 - -0.8
90,643 + -2.3
90,648 - -0.4
90,649 - -1.6
90,652 + 0.8
90,652 - -0.1
90,655 - -0.8
90,660 + 1.3
90,660 - 0.1
90,662 - 0.7
90,667 - 1.0
90,667 - 0.2
90,668 + 0.4
90,670 + -0.3
90,673 - -0.7
90,674 + -3.5
90,682 + 0.2
90,686 - -0.8
90,686 - 1.3
90,694 - -0.4
90,696 + 0.6
90,700 - -0.1
90,701 + -0.1
90,707 + -0.4
90,720 - 1.8
90,809 + 0.3
90,811 - 0.1
90,819 - 1.2
90,839 + -0.2
90,840 + -1.1
90,850 + 2.1
90,861 + -0.8
91,102 + -0.4
91,107 - 0.4
91,127 - 8405 mRNA_37 0.10 -0.7
91,128 + 8405 mRNA_37 0.10 0.4
91,245 + 8405 mRNA_37 0.15 0.8
91,278 - 8405 mRNA_37 0.17 1.3
91,283 + 8405 mRNA_37 0.17 -0.4
91,411 - 8405 mRNA_37 0.23 0.1
91,423 - 8405 mRNA_37 0.24 0.8
91,436 + 8405 mRNA_37 0.24 -0.1
91,443 - 8405 mRNA_37 0.25 1.6
91,443 - 8405 mRNA_37 0.25 0.6
91,477 - 8405 mRNA_37 0.26 0.3
91,480 - 8405 mRNA_37 0.26 0.9
91,697 - 8405 mRNA_37 0.36 -0.5
91,700 + 8405 mRNA_37 0.36 1.4
91,715 - 8405 mRNA_37 0.37 0.7
91,718 + 8405 mRNA_37 0.37 1.6
91,726 - 8405 mRNA_37 0.38 0.5
91,740 + 8405 mRNA_37 0.38 0.8
91,840 + 8405 mRNA_37 0.43 0.8
91,840 + 8405 mRNA_37 0.43 1.8
92,005 - 8405 mRNA_37 0.50 2.0
92,009 - 8405 mRNA_37 0.51 1.2
92,130 - 8405 mRNA_37 0.56 0.9
92,142 + 8405 mRNA_37 0.57 2.1
92,274 + 8405 mRNA_37 0.63 0.3
92,277 - 8405 mRNA_37 0.63 -0.5
92,300 - 8405 mRNA_37 0.64 -0.0
92,412 - 8405 mRNA_37 0.69 0.4
92,688 - 8405 mRNA_37 0.82 -0.0
92,822 + 8405 mRNA_37 0.88 -0.7
92,857 - 8405 mRNA_37 0.90 0.8
92,974 + -1.0
93,195 - -1.4
93,285 - -0.2
93,293 + -0.2
93,314 - -0.8
93,315 + -0.4
93,318 + 1.4
93,447 - 0.7
93,455 + 0.8
93,461 + 0.5
93,485 + 1.1
93,512 + 0.6
93,614 + 8406 mRNA_38 0.13 -0.4
93,645 - 8406 mRNA_38 0.16 0.0
93,776 - 8406 mRNA_38 0.30 -1.6
93,813 + 8406 mRNA_38 0.34 -0.1
93,961 + 8406 mRNA_38 0.50 -0.2
93,965 - 8406 mRNA_38 0.50 -0.1
94,027 + 8406 mRNA_38 0.57 0.1