Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_36

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_35: 8403 - KOG1611 Predicted short chain-type dehydrogenase, at 84983 to 86013 8403 mRNA_36: 8404 - K00694 bcsA cellulose synthase (UDP-forming), at 86184 to 90147 8404 mRNA_37: 8405 - HMMPfam-Variant SH3 domain-PF14604,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 90908 to 93083 8405

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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85,238 + 8403 mRNA_35 0.25 0.9
85,339 - 8403 mRNA_35 0.35 2.1
85,394 + 8403 mRNA_35 0.40 0.0
85,502 + 8403 mRNA_35 0.50 0.0
85,520 + 8403 mRNA_35 0.52 -0.7
85,661 - 8403 mRNA_35 0.66 0.6
85,670 + 8403 mRNA_35 0.67 -0.1
85,827 - 8403 mRNA_35 0.82 -0.3
85,833 + 8403 mRNA_35 0.82 -1.3
85,943 - -0.9
85,947 + 1.3
85,985 - 0.2
86,078 - 3.0
86,113 - 0.6
86,148 - 0.8
86,211 - -0.1
86,266 + 0.4
86,389 - 1.7
86,443 + -0.5
86,511 - 0.3
86,538 + 3.8
86,598 + 8404 mRNA_36 0.10 0.4
86,798 + 8404 mRNA_36 0.15 1.0
86,883 + 8404 mRNA_36 0.18 0.8
87,119 - 8404 mRNA_36 0.24 0.8
87,663 + 8404 mRNA_36 0.37 -0.5
87,704 + 8404 mRNA_36 0.38 1.0
87,753 - 8404 mRNA_36 0.40 -1.0
88,231 - 8404 mRNA_36 0.52 0.3
88,320 + 8404 mRNA_36 0.54 -0.9
88,335 + 8404 mRNA_36 0.54 1.1
88,374 + 8404 mRNA_36 0.55 1.2
88,453 - 8404 mRNA_36 0.57 -0.0
88,465 + 8404 mRNA_36 0.58 0.2
88,727 + 8404 mRNA_36 0.64 0.5
88,912 - 8404 mRNA_36 0.69 1.2
89,310 + 8404 mRNA_36 0.79 0.7
89,544 + 8404 mRNA_36 0.85 -1.3
89,642 + 8404 mRNA_36 0.87 1.3
89,656 + 8404 mRNA_36 0.88 -0.1
89,887 + -0.5
90,062 + -1.5
90,107 - 0.4
90,219 - -0.3
90,236 - 0.0
90,348 + -0.2
90,354 - 0.3
90,359 + -0.4
90,360 + 0.5
90,362 + 1.4
90,372 - 0.3
90,378 - -0.7
90,378 - 0.1
90,390 + 0.3
90,391 + 0.5
90,392 + -0.1
90,393 + 1.4
90,393 - 1.5
90,394 + 0.2
90,395 + 0.4
90,395 + 0.1
90,399 - -0.2
90,401 - 1.5
90,401 + 0.7
90,403 - 0.1
90,403 - 0.2
90,408 + 0.4
90,408 - 1.3
90,409 + -0.0
90,409 - 0.6
90,411 + -0.3
90,411 + -1.2
90,413 + 0.4
90,420 - 0.6
90,422 - 1.9
90,423 + -0.7
90,424 + 0.7
90,425 + 0.8
90,425 + 1.5
90,428 - 0.6
90,437 - -0.7
90,439 - -1.5
90,439 - -0.4
90,439 - 1.3
90,440 - -0.3
90,441 - 0.6
90,442 + -0.5
90,443 - -0.2
90,453 + 0.0
90,454 - 0.3
90,455 - 0.2
90,462 + 1.6
90,471 + 0.0
90,472 - 0.2
90,480 - -0.6
90,496 - 0.1
90,498 - 1.0
90,499 + -0.5
90,501 - -1.0
90,502 + 1.3
90,503 - -0.6
90,503 - -0.3
90,516 - 1.5
90,517 + 0.0
90,517 + 0.0
90,528 + -0.6
90,547 + 1.7
90,556 + 0.2
90,565 - 0.5
90,567 - 1.0
90,574 - 1.3
90,575 + 1.3
90,579 - -1.1
90,587 + 1.3
90,589 - 0.0
90,590 + 0.6
90,591 + 2.3
90,594 - -0.4
90,603 + -0.0
90,620 - -0.5
90,621 - -2.4
90,625 - -0.2
90,629 - -0.2
90,630 + 0.5
90,630 + -1.0
90,630 - -0.1
90,633 - 1.2
90,633 + -0.2
90,636 - 2.0
90,639 - 1.8
90,641 - -0.8
90,643 + -2.3
90,648 - -0.4
90,649 - -1.6
90,652 + 0.8
90,652 - -0.1
90,655 - -0.8
90,660 + 1.3
90,660 - 0.1
90,662 - 0.7
90,667 - 1.0
90,667 - 0.2
90,668 + 0.4
90,670 + -0.3
90,673 - -0.7
90,674 + -3.5
90,682 + 0.2
90,686 - -0.8
90,686 - 1.3
90,694 - -0.4
90,696 + 0.6
90,700 - -0.1
90,701 + -0.1
90,707 + -0.4
90,720 - 1.8
90,809 + 0.3
90,811 - 0.1
90,819 - 1.2
90,839 + -0.2
90,840 + -1.1
90,850 + 2.1
90,861 + -0.8
91,102 + -0.4
91,107 - 0.4
91,127 - 8405 mRNA_37 0.10 -0.7
91,128 + 8405 mRNA_37 0.10 0.4