Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1: 8369 - K12198 CHMP5, VPS60 charged multivesicular body protein 5, at 1571 to 2453 8369 mRNA_2: 8370 - PRINTS-Proline rich extensin signature-PR01217, at 3233 to 7809 8370

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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595 + 1.2
609 - 2.1
637 - 1.4
651 + 1.5
654 + 0.3
659 - 0.0
663 + 0.9
672 - -1.1
673 + -0.1
685 + -0.7
725 + -1.2
790 - -0.7
791 + -1.2
798 + -0.6
798 + 0.6
804 - -1.9
821 + -0.0
860 + 0.4
899 - -1.1
916 + -0.7
939 + 0.4
957 + -1.6
975 - -0.7
976 + 2.4
996 - -1.4
1,005 + -1.2
1,005 - -2.1
1,007 - 0.9
1,052 + 0.9
1,058 + 0.7
1,070 + -0.4
1,113 - -0.5
1,115 - -0.1
1,117 + 0.0
1,207 + -0.1
1,257 + 0.3
1,285 - -0.3
1,359 - 0.3
1,422 + 0.8
1,960 + 8369 mRNA_1 0.44 0.6
2,268 + 8369 mRNA_1 0.79 -1.0
2,361 - 8369 mRNA_1 0.89 1.3
2,441 + -1.2
2,550 + -0.7
2,552 - 0.5
2,564 + -1.1
2,701 + -1.2
2,839 - -0.8
2,853 + -0.1
2,946 - 0.0
3,005 - -0.3
3,125 - -1.2
3,136 + -0.0