Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8445

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8444: 16812 - HMMPfam-HPP family-PF04982, at 1245656 to 1246720 16812 mRNA_8445: 16813 - KOG0691 Molecular chaperone (DnaJ superfamily), at 1247628 to 1249851 16813 mRNA_8446: 16814 - K01115 PLD1_2 phospholipase D1/2, at 1250105 to 1254255 16814

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,246,645 - 0.0
1,246,652 + 0.3
1,246,654 + 1.5
1,246,792 + 0.2
1,246,792 + 0.2
1,246,810 - 0.8
1,246,833 + 0.1
1,246,840 + 1.1
1,246,841 + 1.3
1,246,849 + 0.9
1,246,861 + -1.7
1,246,867 - 1.8
1,246,953 - 0.3
1,247,005 + -2.3
1,247,267 + -1.0
1,247,281 - -0.4
1,247,443 - 2.3
1,247,564 + 2.1
1,247,573 + 0.1
1,247,576 + -0.1
1,247,578 + -0.1
1,247,581 - 0.4
1,247,583 - 0.0
1,247,591 - -0.8
1,247,598 - -1.6
1,247,617 + 0.4
1,247,635 + 1.1
1,247,692 + -1.2
1,247,696 + 0.8
1,247,704 - -1.0
1,247,717 - -1.0
1,247,719 + -1.0
1,247,723 + -0.0
1,247,748 - 1.9
1,247,772 - -1.1
1,247,783 - -1.4
1,247,884 + 16813 mRNA_8445 0.12 -1.7
1,247,984 + 16813 mRNA_8445 0.16 -0.6
1,248,023 + 16813 mRNA_8445 0.18 -1.5
1,248,172 + 16813 mRNA_8445 0.24 0.7
1,248,355 - 16813 mRNA_8445 0.33 -1.5
1,248,435 - 16813 mRNA_8445 0.36 0.7
1,248,605 - 16813 mRNA_8445 0.44 0.5
1,248,606 + 16813 mRNA_8445 0.44 0.2
1,248,636 + 16813 mRNA_8445 0.45 0.5
1,248,986 + 16813 mRNA_8445 0.61 -0.3
1,249,066 - 16813 mRNA_8445 0.65 0.7
1,249,136 - 16813 mRNA_8445 0.68 2.0
1,249,167 - 16813 mRNA_8445 0.69 0.3
1,249,551 - 16813 mRNA_8445 0.86 0.1
1,249,570 - 16813 mRNA_8445 0.87 -0.4
1,249,604 - 16813 mRNA_8445 0.89 -0.8
1,249,736 - -1.1
1,249,831 - 0.7
1,250,241 + 0.2
1,250,354 - -3.0
1,250,363 + 0.3
1,250,419 - -0.2
1,250,462 - 0.1
1,250,763 - 16814 mRNA_8446 0.16 -0.3
1,250,779 - 16814 mRNA_8446 0.16 0.1