Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8409

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8408: 16776 - Hypothetical Protein, at 1146400 to 1148528 16776 mRNA_8409: 16777 - K09667 OGT protein O-GlcNAc transferase, at 1148634 to 1155172 16777 mRNA_8410: 16778 - K12761 SNF1 carbon catabolite-derepressing protein kinase, at 1155634 to 1159160 16778

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,147,643 - 16776 mRNA_8408 0.58 0.5
1,147,653 + 16776 mRNA_8408 0.59 0.1
1,147,671 - 16776 mRNA_8408 0.60 -1.0
1,147,762 - 16776 mRNA_8408 0.64 -1.8
1,147,773 - 16776 mRNA_8408 0.64 0.4
1,147,817 + 16776 mRNA_8408 0.67 -0.9
1,147,862 + 16776 mRNA_8408 0.69 1.7
1,148,253 - 16776 mRNA_8408 0.87 0.4
1,148,254 - 16776 mRNA_8408 0.87 0.3
1,148,331 + 0.7
1,148,334 - -0.8
1,148,334 + -1.5
1,148,406 - 0.8
1,148,428 + 1.4
1,148,567 - -0.4
1,148,574 + 0.3
1,148,836 + -1.3
1,149,001 - -2.4
1,149,275 - -1.4
1,149,392 + 16777 mRNA_8409 0.12 -0.4
1,149,440 - 16777 mRNA_8409 0.12 1.3
1,149,466 + 16777 mRNA_8409 0.13 1.6
1,149,504 - 16777 mRNA_8409 0.13 -0.6
1,149,542 + 16777 mRNA_8409 0.14 -1.1
1,150,130 - 16777 mRNA_8409 0.23 -0.3
1,150,312 + 16777 mRNA_8409 0.26 -0.2
1,150,423 - 16777 mRNA_8409 0.27 1.2
1,150,483 - 16777 mRNA_8409 0.28 -3.4
1,150,624 - 16777 mRNA_8409 0.30 -0.2
1,150,705 - 16777 mRNA_8409 0.32 1.6
1,151,155 + 16777 mRNA_8409 0.39 1.2
1,151,504 - 16777 mRNA_8409 0.44 0.1
1,151,746 + 16777 mRNA_8409 0.48 -0.6
1,151,796 - 16777 mRNA_8409 0.48 -0.1
1,151,800 + 16777 mRNA_8409 0.48 -0.1
1,151,862 - 16777 mRNA_8409 0.49 -0.2
1,151,891 - 16777 mRNA_8409 0.50 -0.9
1,152,182 - 16777 mRNA_8409 0.54 1.7
1,152,368 - 16777 mRNA_8409 0.57 0.1
1,152,434 - 16777 mRNA_8409 0.58 0.4
1,152,624 - 16777 mRNA_8409 0.61 0.0
1,152,685 - 16777 mRNA_8409 0.62 -1.7
1,152,716 + 16777 mRNA_8409 0.62 -0.0
1,152,883 - 16777 mRNA_8409 0.65 1.3
1,153,869 + 16777 mRNA_8409 0.80 -0.7
1,153,940 - 16777 mRNA_8409 0.81 -0.5
1,153,959 - 16777 mRNA_8409 0.81 -1.7
1,154,554 - -2.1
1,154,578 + 2.3
1,154,835 - 0.0
1,154,978 - 0.2
1,154,997 + -0.9
1,155,005 + 0.4
1,155,028 - -0.9
1,155,151 + 0.7
1,155,152 + -0.9
1,155,161 + -0.4
1,155,164 - -0.1
1,155,169 + -0.6
1,155,175 - -0.6
1,155,274 - 1.5
1,155,294 - 1.4
1,155,366 + -1.1
1,155,446 + -0.1
1,155,452 - -0.5
1,155,452 + 0.1
1,155,452 + -1.2
1,155,462 + -2.6
1,155,464 + 0.3
1,155,475 - 0.6
1,155,477 + -1.0
1,155,566 + -1.6
1,155,572 - -1.9
1,155,573 - -3.4
1,155,580 - -0.3
1,155,580 - 0.0
1,155,581 - -2.3
1,155,581 - -0.5
1,155,584 + -1.4
1,155,586 + -1.9
1,155,595 + -1.9
1,155,602 + 1.1
1,155,603 - 0.9
1,155,604 + -0.8
1,155,624 + -1.1
1,155,742 + -3.6
1,155,892 + -0.6
1,155,894 + -4.5
1,155,899 - -2.8
1,155,913 + 0.1
1,155,914 - -4.8